RetrogeneDB ID: | retro_rnor_1085 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:9203710..9204805(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000026456 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Galnt12 | ||
Ensembl ID: | ENSRNOG00000008099 | ||
Aliases: | Galnt12, RGD1562001 | ||
Description: | None |
Percent Identity: | 87.03 % |
Parental protein coverage: | 63.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | YDYDNLPKTSVVIAFYNEAWSTLLRTVYSVLETSPDILLEEVILVDDYSDREHLKEPLAN-ELSQLPKVR |
YDYDNLPKTSVVIAFYNEA.STLLRTVYSVL.TSPDILLEEVILVDDYSDR.HLKEPLA..ELS.LPKVR | |
Retrocopy | YDYDNLPKTSVVIAFYNEALSTLLRTVYSVLDTSPDILLEEVILVDDYSDRDHLKEPLAK<ELSRLPKVR |
Parental | LIRASKREGLVRARLLGASAARGEVLTFLDCHCECHEGWLEPLLQRIHEKESAVVCPVIDVIDWNTFEYL |
LI.ASKR.G....RLLGASAARGEVL.FLDCHC.CHEGWLE.LLQR.HEKESAVVCPVIDVIDWNT.EYL | |
Retrocopy | LIGASKR-GPSASRLLGASAARGEVLRFLDCHCDCHEGWLESLLQRTHEKESAVVCPVIDVIDWNTSEYL |
Parental | GNSGEPQIGGFDWRLVFTWHVVPQRERKLMRSPIDVIRSPTMAGGLFAVSKRYFEYLGSYDTGMEVWGGE |
GNSGEPQIGGFDWR.VF.WHVVP..ERKLMR.PID.IRSPTMAGGLF..SKRYFEYLGSYDTGMEVWG.E | |
Retrocopy | GNSGEPQIGGFDWRQVFMWHVVPWWERKLMRTPIDIIRSPTMAGGLFVMSKRYFEYLGSYDTGMEVWGRE |
Parental | NLEFSFRIWQCGGTLETHPCSHVGHVFPKQAPYSRSKALANSVRAAEVWMDDFKELYYHRNPQ-ARLEPF |
NLEFSFRIWQCG..LETHP.SHVGHVFPKQAPYSRSKALANSVRAAEVW.D..KELY.HRNPQ.ARLEP. | |
Retrocopy | NLEFSFRIWQCGDSLETHPYSHVGHVFPKQAPYSRSKALANSVRAAEVWTDELKELYHHRNPQ<ARLEPS |
Parental | GDVTERKKLRAKLQCKDFKWFLDTVYPELHVPEDRPGFFGM-LENRGLRGYCLDYNPPSENNVEGHQVLL |
G..TERKKL..KLQCKDFK.FL.TVYPELHVPEDRPGFFG..LENRGLRG.CLDYNPP.EN.VEGHQVLL | |
Retrocopy | GELTERKKLQPKLQCKDFKRFLATVYPELHVPEDRPGFFGS<LENRGLRGHCLDYNPPTENSVEGHQVLL |
Parental | YLCHGMGQNQFFEYTSRQEI |
YLC.GMGQNQFFE.TSRQEI | |
Retrocopy | YLCPGMGQNQFFECTSRQEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .14 RPM |
SRP017611_liver | 0 .00 RPM | 0 .40 RPM |