RetrogeneDB ID: | retro_mmur_282 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_2176:431105..431953(-) | ||
Located in intron of: | ENSMICG00000005114 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSMICG00000011075 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877] |
Percent Identity: | 67.25 % |
Parental protein coverage: | 51.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PVLMRPPVPADALGAQGEAVRLQLQGKELRLQEESVRLHQINIYLSDRISLHRRLPERWNPLCKEKKYDY |
P....PP....ALG..G.A..LQL...EL..QEE......INIYLSDRISLHR.........CK.KK..Y | |
Retrocopy | PLYEKPPADSHALGEWGRASKLQLNEGELKQQEELIERYAINIYLSDRISLHRHIEDKRMYECKSKKFNY |
Parental | DNLPTTSVVIAFYNEAWSTLLRTVYSVLETSPDILLEEVILVDDYSDREHLKERLANELSGLPKVRLIRA |
..LPTTSV.IAFYNEAWSTLLRT..SVLETSP..LL.E.ILVDD.SDR..LK..L....S.L..VRLIR. | |
Retrocopy | RRLPTTSVIIAFYNEAWSTLLRTIHSVLETSPAVLLKEIILVDDLSDRAYLKTQLETYISNLDRVRLIRT |
Parental | SKREGLVRARLLGASVAKGDVLTFLDCHCECHEGWLEPLLQRIHEEESAVVCPVIDVIDWNTFEYLGNAG |
.KREGLVRARL.GA..A.GDVLTFLDCHCEC..GWLEPLL.RI...E..VVCPVID.IDWNTFE.....G | |
Retrocopy | NKREGLVRARLIGATFATGDVLTFLDCHCECNSGWLEPLLERIGMDETIVVCPVIDTIDWNTFEFYMQTG |
Parental | EPQIGGFDWRLVFTWHVVPERERARMRSPIDVIRSPTMAGGLFAVSKKYFEYLGSYDTGMEVWGGE-NLE |
EP.IGGFDWRL.F.WH.VP..ER.R..S.ID.IRSPTMAGGLFAVSKKYF.YLG.YDTGMEVWGGE.NLE | |
Retrocopy | EPMIGGFDWRLTFQWHSVPKHERDRRKSRIDPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGE<NLE |
Parental | FSFR |
.SF. | |
Retrocopy | LSFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |