RetrogeneDB ID:

retro_mmur_282

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_2176:431105..431953(-)
Located in intron of:ENSMICG00000005114
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GALNT12
Ensembl ID:ENSMICG00000011075
Aliases:None
Description:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877]


Retrocopy-Parental alignment summary:






>retro_mmur_282
CCACTTTATGAGAAGCCCCCTGCAGATTCCCATGCACTTGGGGAGTGGGGGAGAGCCAGCAAACTCCAGCTCAACGAGGG
TGAACTGAAGCAGCAAGAAGAACTCATTGAGAGATATGCCATTAATATTTACCTCAGTGACAGGATTTCCCTGCACCGCC
ACATAGAGGATAAAAGAATGTATGAGTGTAAATCCAAGAAGTTCAACTATAGGAGACTTCCTACCACCTCTGTTATTATC
GCTTTCTATAATGAAGCCTGGTCAACTTTGCTCCGCACCATTCACAGTGTTTTAGAAACTTCTCCTGCAGTCCTTTTGAA
AGAGATCATCTTGGTCGATGACTTGAGTGACAGAGCTTATTTGAAGACACAACTTGAAACTTACATCAGCAATCTGGATA
GAGTTCGCTTGATTAGAACAAATAAGCGAGAGGGGCTGGTTAGGGCCCGTCTGATTGGTGCCACTTTTGCCACTGGGGAT
GTCCTCACTTTCCTGGATTGTCACTGTGAGTGTAATTCTGGTTGGTTGGAACCACTTTTGGAAAGGATTGGTATGGATGA
AACAATAGTTGTTTGTCCTGTTATAGACACCATTGATTGGAATACTTTTGAATTCTACATGCAAACAGGGGAGCCCATGA
TTGGTGGGTTTGACTGGCGTTTAACATTTCAGTGGCATTCTGTCCCCAAACATGAAAGGGACAGGCGGAAATCAAGAATT
GACCCTATCAGATCACCCACCATGGCTGGAGGACTGTTTGCAGTCAGCAAGAAATATTTTCAGTACCTTGGAACATATGA
CACTGGAATGGAAGTTTGGGGAGGTGAAACCTGGAGCTTTCTTTTAAG

ORF - retro_mmur_282 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.25 %
Parental protein coverage: 51.55 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPVLMRPPVPADALGAQGEAVRLQLQGKELRLQEESVRLHQINIYLSDRISLHRRLPERWNPLCKEKKYDY
P....PP....ALG..G.A..LQL...EL..QEE......INIYLSDRISLHR.........CK.KK..Y
RetrocopyPLYEKPPADSHALGEWGRASKLQLNEGELKQQEELIERYAINIYLSDRISLHRHIEDKRMYECKSKKFNY
ParentalDNLPTTSVVIAFYNEAWSTLLRTVYSVLETSPDILLEEVILVDDYSDREHLKERLANELSGLPKVRLIRA
..LPTTSV.IAFYNEAWSTLLRT..SVLETSP..LL.E.ILVDD.SDR..LK..L....S.L..VRLIR.
RetrocopyRRLPTTSVIIAFYNEAWSTLLRTIHSVLETSPAVLLKEIILVDDLSDRAYLKTQLETYISNLDRVRLIRT
ParentalSKREGLVRARLLGASVAKGDVLTFLDCHCECHEGWLEPLLQRIHEEESAVVCPVIDVIDWNTFEYLGNAG
.KREGLVRARL.GA..A.GDVLTFLDCHCEC..GWLEPLL.RI...E..VVCPVID.IDWNTFE.....G
RetrocopyNKREGLVRARLIGATFATGDVLTFLDCHCECNSGWLEPLLERIGMDETIVVCPVIDTIDWNTFEFYMQTG
ParentalEPQIGGFDWRLVFTWHVVPERERARMRSPIDVIRSPTMAGGLFAVSKKYFEYLGSYDTGMEVWGGE-NLE
EP.IGGFDWRL.F.WH.VP..ER.R..S.ID.IRSPTMAGGLFAVSKKYF.YLG.YDTGMEVWGGE.NLE
RetrocopyEPMIGGFDWRLTFQWHSVPKHERDRRKSRIDPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGE<NLE
ParentalFSFR
.SF.
RetrocopyLSFK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_282 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_282 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 34 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000023021 retrocopy
Ailuropoda melanoleuca ENSAMEG000000045201 retrocopy
Anas platyrhynchos ENSAPLG000000121971 retrocopy
Bos taurus ENSBTAG000000090371 retrocopy
Canis familiaris ENSCAFG000000024941 retrocopy
Cavia porcellus ENSCPOG000000124181 retrocopy
Equus caballus ENSECAG000000165461 retrocopy
Ficedula albicollis ENSFALG000000051881 retrocopy
Felis catus ENSFCAG000000088311 retrocopy
Gorilla gorilla ENSGGOG000000057921 retrocopy
Loxodonta africana ENSLAFG000000220111 retrocopy
Meleagris gallopavo ENSMGAG000000072441 retrocopy
Microcebus murinus ENSMICG00000011075 1 retrocopy
retro_mmur_282 ,
Microcebus murinus ENSMICG000000139171 retrocopy
Myotis lucifugus ENSMLUG000000026301 retrocopy
Macaca mulatta ENSMMUG000000195611 retrocopy
Mustela putorius furoENSMPUG000000065021 retrocopy
Mus musculus ENSMUSG000000397741 retrocopy
Nomascus leucogenys ENSNLEG000000170191 retrocopy
Oryctolagus cuniculus ENSOCUG000000162211 retrocopy
Otolemur garnettii ENSOGAG000000014082 retrocopies
Ochotona princeps ENSOPRG000000060292 retrocopies
Procavia capensis ENSPCAG000000050681 retrocopy
Pongo abelii ENSPPYG000000194371 retrocopy
Pelodiscus sinensis ENSPSIG000000172461 retrocopy
Pan troglodytes ENSPTRG000000211801 retrocopy
Pteropus vampyrus ENSPVAG000000087741 retrocopy
Rattus norvegicus ENSRNOG000000080993 retrocopies
Sarcophilus harrisii ENSSHAG000000174741 retrocopy
Sus scrofa ENSSSCG000000053791 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000213061 retrocopy
Tupaia belangeri ENSTBEG000000036271 retrocopy
Tarsius syrichta ENSTSYG000000049751 retrocopy
Tursiops truncatus ENSTTRG000000108481 retrocopy



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