RetrogeneDB ID: | retro_ggor_890 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:88405986..88407459(-) | ||
Located in intron of: | ENSGGOG00000008572 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSGGOG00000005792 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.53 % |
Parental protein coverage: | 86.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EELRLQEESVRLHQINIYLSDRISLHRRLPERWNPLCKEKKYDYDNLPRTSVIIAFYNEAWSTLLRTVYS |
.EL..QEE......INIYLSDRISLHR.........CK..K..Y..LP.TSVIIAFYNEAWSTLLRT..S | |
Retrocopy | DELKQQEELIERYAINIYLSDRISLHRHIEDKRMYECKSQKFNYRTLPTTSVIIAFYNEAWSTLLRTIHS |
Parental | VLETSPDILLEEVILVDDYSDREHLKERLANELSGLPKVRLIRANKREGLVRARLLGASAARGDVLTFLD |
VLETSP..LL.E.ILVDD.SDR..LK..L....S.L..VRLIR.NKREGLVRARL.GA..A.GDVLTFLD | |
Retrocopy | VLETSPAVLLKEIILVDDLSDRVYLKTQLETYISNLDRVRLIRTNKREGLVRARLIGATFATGDVLTFLD |
Parental | CHCECHEGWLEPLLQRIHEEESAVVCPVIDVIDWNTFEYLGNSGEPQIGGFDWRLVFTWHTVPERERIRM |
CHCEC..GWLEPLL.RI...E.AVVCPVID.IDWNTFE.....GEP.IGGFDWRL.F.WH.VP..ER.R. | |
Retrocopy | CHCECNSGWLEPLLERIGRDETAVVCPVIDTIDWNTFEFYMQTGEPMIGGFDWRLTFQWHSVPKQERDRR |
Parental | RSPVDVIRSPTMAGGLFAVSKKYFEYLGSYDTGMEVWGGENLEFSFRIWQCGGVLETHPCSHVGHVFPKQ |
.S..D.IRSPTMAGGLFAVSKKYF.YLG.YDTGMEVWGGENLE.SFR.WQCGG.LE.HPCSHVGHVFPK. | |
Retrocopy | ISRIDPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGENLELSFRVWQCGGKLEIHPCSHVGHVFPKR |
Parental | APYSRNKALANSVRAAEVWMDEFKELYYHRNPRARLEPFGDVTERKQLRAKLQCKDFKWFLETVYPELHV |
APY.R...L.N..RAAEVWMDE.KE..Y.RNP.AR.E..GD..ERK.LR..L.CK.F.W.L..V.P.LHV | |
Retrocopy | APYARPNFLRNTARAAEVWMDEYKEHFYNRNPPARKEAYGDISERKLLRERLRCKSFDWYLKNVFPNLHV |
Parental | PEDRPGFFGMLQNKGLTDYCFDYNPPDENQIVGHQVILYLCHGMGQNQFFEYTSQKEIRYNTHQPEGCIA |
PEDRPG..G.....G....C.DYN.PD.N...G....L..CHG.G.NQFFEYTS.KEIR.N....E.C.. | |
Retrocopy | PEDRPGWHGAIRSRGISSECLDYNSPDNNP-TGANLSLFGCHGQGGNQFFEYTSNKEIRFNS-VTELCAE |
Parental | VEAGMDTLIMHLCEE---TAPENQKFVLQEDGSLFHEQSKKCVQAARKESSDSFVPLLRDCTNSD-HQKW |
V........M..C.......P.N......EDG..FH..S..C..A.R.......V...R.C...D..Q.W | |
Retrocopy | VPEQKNYVGMQNCPKDGFPVPANIIWHFKEDGTIFHPHSGLCLSAYRTPEGRPDVQ-MRTCDALDKNQIW |
Parental | FFKE |
.F.. | |
Retrocopy | SFEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .58 RPM | 5 .75 RPM |
SRP007412_cerebellum | 1 .06 RPM | 31 .64 RPM |
SRP007412_heart | 0 .44 RPM | 0 .41 RPM |
SRP007412_kidney | 3 .52 RPM | 4 .91 RPM |
SRP007412_liver | 1 .90 RPM | 2 .22 RPM |
SRP007412_testis | 3 .42 RPM | 5 .59 RPM |