RetrogeneDB ID: | retro_ogar_3253 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873756.1:443930..445299(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000004051 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSOGAG00000001408 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877] |
Percent Identity: | 92.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | CREKKYDYANMPKTSVIIAFYNEAWSTLLRTVYSVLETSPDILLEEVILVDDYSDREHLKERLANELSGL |
CREKKYDYANMPKTSVIIAFYNE.WSTLLRTVYSVLETSPD.LLEEVILVDDYS.REHLKERLANE.SGL | |
Retrocopy | CREKKYDYANMPKTSVIIAFYNEDWSTLLRTVYSVLETSPDTLLEEVILVDDYSGREHLKERLANEVSGL |
Parental | PKVR-LIRANKREGLVRARLLGASAARGNVLTFLDCHCECHEGWLEPLLQRIHEEESAVVCPVIDVIDWN |
PK.R.LI.ANKRE.LVRARLLGASAARGNV.TFLDCHCECHEGWLEPLLQ.IHEEESAVVCPV.DVIDWN | |
Retrocopy | PKAR<LINANKRECLVRARLLGASAARGNVVTFLDCHCECHEGWLEPLLQKIHEEESAVVCPVMDVIDWN |
Parental | TFEYLGNSGEPQIGGFDWRLVFTWHTVPERERQRMKSPIDVIRSPTMAGGLFAVSKKYFEYLGSYDTGME |
TFEYLGNSGEPQIGGFDWRLVFTW.TVPERERQRMKSPI.VIRSPTMAGGLFAVSKKYFEYLGSYD.GME | |
Retrocopy | TFEYLGNSGEPQIGGFDWRLVFTWPTVPERERQRMKSPIEVIRSPTMAGGLFAVSKKYFEYLGSYDIGME |
Parental | VWGGENLEFSFRIWQCGGSLETHPCSHVGHVFPKQAPYSRNKALANSVR-AAEVWMDDYKELYYHRNPRA |
VWGGENL.FSFRIWQC.GSLETHPCSHVGHVFPKQAPYS.NKALANSV..AAEVWMDD.KELYYHRN.RA | |
Retrocopy | VWGGENLKFSFRIWQCSGSLETHPCSHVGHVFPKQAPYSLNKALANSVL<AAEVWMDDCKELYYHRNSRA |
Parental | RLEPFGDVTERRQLREKLQCKDFKWFLETVFPELHVPEDRPGFFGMLQNKGLKKYCFDYNPPDENQVAGR |
..EPFGDVTERRQLREKLQCKDFKWFLETVFPELHVPEDRPGF.GMLQNKGLKKYCFDYNPP.ENQVAGR | |
Retrocopy | TSEPFGDVTERRQLREKLQCKDFKWFLETVFPELHVPEDRPGFLGMLQNKGLKKYCFDYNPPHENQVAGR |
Parental | QVILYLCHGLGQNQFFEYTSQYEIRYNTHHPEACVAVEEDSDILVMHLCKEVAPENQKFILQEDGSLFHK |
QVILYLCHGLGQNQFFEYTSQYEI.YNTHHPE.CVA.EEDSDIL.MHLCKEVAPENQKFIL.EDGSLFHK | |
Retrocopy | QVILYLCHGLGQNQFFEYTSQYEIHYNTHHPEVCVAMEEDSDILTMHLCKEVAPENQKFIL*EDGSLFHK |
Parental | QSKKCVQAAKKESSDNYEPLLRDCTNSDYQRWFFQEHVS |
QSKKCVQAAKKESSD..EPLL.DCTNSDYQRWFFQEHVS | |
Retrocopy | QSKKCVQAAKKESSDSFEPLL*DCTNSDYQRWFFQEHVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |