RetrogeneDB ID: | retro_btau_1318 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:34601651..34601948(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSBTAG00000007737 | ||
Aliases: | UBA52, RPS27A, UBB, UBC | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P63048] |
Percent Identity: | 60.61 % |
Parental protein coverage: | 77.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEP |
.TI..EV..SDT..N.KAKIQDKEG..PD.Q.LI..GKQLED..TLSD.NIQKE....LVLR....IIEP | |
Retrocopy | RTIIIEVKSSDTTDNIKAKIQDKEGNWPD*QHLISTGKQLEDDSTLSDHNIQKEPARLLVLRVQASIIEP |
Parental | SLRQLAQKYNCDKMICRKCYARLHPRAVN |
SL.QL.QKY...KMIC....A.L.P.A.. | |
Retrocopy | SLCQLTQKYSGNKMICCEYCACLQPHAAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 161 .42 RPM |
ERP005899_muscle | 0 .00 RPM | 900 .42 RPM |
SRP017611_brain | 0 .00 RPM | 104 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 167 .15 RPM |
SRP017611_liver | 0 .00 RPM | 152 .07 RPM |
SRP030211_testis | 0 .00 RPM | 228 .14 RPM |