RetrogeneDB ID: | retro_amel_800 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192643.1:896738..897106(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000002480 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL40 | ||
Ensembl ID: | ENSAMEG00000011356 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.38 % |
Parental protein coverage: | 99.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL |
QI..KTL.G.T..LE.EP.D..E.VKAK.QD.EG..PDQQ.LIFA.K.LE.G.TLSD.N.QKE.TL.LVL | |
Retrocopy | QIIMKTLMGMTV-LETEPRDAMESVKAKMQDNEGVLPDQQCLIFASKWLEGGHTLSDHNTQKEATLPLVL |
Parental | RLRGGIIEPSLRQLAQKYNCDKMICR-KCYARLHPRAVNCRKKKCGHTNNLRPKKKVK |
...GG.IEP.L..L.QKYNC.K.I....C....H...V.C.K.KCG.TNNL.PKK.V. | |
Retrocopy | HVPGGLIEPPLPKLDQKYNCGKVILH<QCSLHPH--SVTCCK-KCGYTNNLHPKKRVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |