Parental gene:

UBA52, ENSCJAG00000007470

Aliases:None
Description:ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:17584685..17587268(+)


>ENSCJAG00000007470
ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAA
AGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTAGAGGATGGCC
GCACGCTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTATTGAGCCT
TCCCTCCGCCAGCTTGCCCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGCTATGCTCGCCTGCACCCTCGTGC
TGTCAACTGCCGCAAGAAGAAATGTGGCCACACCAACAACCTGCGCCCCAAGAAGAAGGTCAAATAA

Library Parental gene expression (RPM)
SRP051959_colon 85 .95 RPM
SRP051959_heart 106 .63 RPM
SRP051959_kidney 117 .88 RPM
SRP051959_liver 121 .58 RPM
SRP051959_lung 156 .83 RPM
SRP051959_lymph_node 216 .41 RPM
SRP051959_skeletal_muscle 136 .42 RPM
SRP051959_spleen 165 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011356 ortholog_one2one 10 retrogenes
retro_amel_1045, retro_amel_1416, retro_amel_1455, retro_amel_1759, retro_amel_1849, retro_amel_214, retro_amel_800, retro_amel_904, retro_amel_941, retro_amel_973,
Bos taurus ENSBTAG00000007737 ortholog_one2one 3 retrogenes
retro_btau_1059, retro_btau_1318, retro_btau_832,
Equus caballus ENSECAG00000020660 ortholog_one2one 8 retrogenes
retro_ecab_1014, retro_ecab_107, retro_ecab_313, retro_ecab_641, retro_ecab_772, retro_ecab_835, retro_ecab_836, retro_ecab_857,
Felis catus ENSFCAG00000009745 ortholog_one2one 14 retrogenes
retro_fcat_1159, retro_fcat_1204, retro_fcat_1226, retro_fcat_1232, retro_fcat_1382, retro_fcat_1428, retro_fcat_1449, retro_fcat_1540, retro_fcat_1661, retro_fcat_86, retro_fcat_876, retro_fcat_909, retro_fcat_939, retro_fcat_989,
Homo sapiens ENSG00000221983 ortholog_one2one 2 retrogenes
retro_hsap_2622, retro_hsap_4004,
Latimeria chalumnae ENSLACG00000008132 ortholog_many2many 1 retrogene
retro_lcha_11,
Mustela putorius furo ENSMPUG00000015527 possible_ortholog 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 possible_ortholog 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Ochotona princeps ENSOPRG00000004784 ortholog_one2one 6 retrogenes
retro_opri_1016, retro_opri_144, retro_opri_219, retro_opri_458, retro_opri_644, retro_opri_787,
Pongo abelii ENSPPYG00000009746 ortholog_one2many 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Pan troglodytes ENSPTRG00000039223 ortholog_one2one 8 retrogenes
retro_ptro_1142, retro_ptro_1767, retro_ptro_2607, retro_ptro_2718, retro_ptro_2815, retro_ptro_792, retro_ptro_895, retro_ptro_919,
Rattus norvegicus ENSRNOG00000019974 ortholog_one2one 7 retrogenes
retro_rnor_1125, retro_rnor_1458, retro_rnor_2115, retro_rnor_2472, retro_rnor_2487, retro_rnor_2901, retro_rnor_944,
Sorex araneus ENSSARG00000000984 possible_ortholog 11 retrogenes
retro_sara_145, retro_sara_164, retro_sara_192, retro_sara_256, retro_sara_281, retro_sara_331, retro_sara_344, retro_sara_599, retro_sara_67, retro_sara_687, retro_sara_94,
Sarcophilus harrisii ENSSHAG00000007075 ortholog_one2one 3 retrogenes
retro_shar_405, retro_shar_434, retro_shar_703,
Ictidomys tridecemlineatus ENSSTOG00000004678 possible_ortholog 1 retrogene
retro_itri_49,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2many 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_207 89.06 100.00
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2. retro_cjac_658 82.81 100.00
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3. retro_cjac_683 77.67 80.47
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4. retro_cjac_883 92.19 100.00
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5. retro_cjac_892 89.15 100.00
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6. retro_cjac_898 78.74 97.66
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7. retro_cjac_1363 77.01 67.97
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8. retro_cjac_1388 87.50 100.00
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9. retro_cjac_1426 91.92 77.34
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10. retro_cjac_1485 81.25 100.00
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11. retro_cjac_1521 77.08 74.22
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12. retro_cjac_1561 75.81 96.09
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13. retro_cjac_1731 93.85 100.00
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14. retro_cjac_1743 82.79 94.53
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15. retro_cjac_2002 72.80 97.66
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16. retro_cjac_2254 77.78 97.66
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17. retro_cjac_2292 93.65 97.66
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18. retro_cjac_2413 92.31 100.00
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19. retro_cjac_2501 86.82 100.00
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20. retro_cjac_2505 84.50 100.00
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21. retro_cjac_2898 90.48 82.03
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22. retro_cjac_3054 76.15 100.00
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Download FASTA sequences of all ENSCJAG00000007470 retrocopies