Parental gene:

Uba52, ENSRNOG00000019974

Aliases:Uba52, Rps27a, Ubb
Description:Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P62986]
Organism:Rat (Rattus norvegicus)
Coordinates:16:20524448..20526604(+)


>ENSRNOG00000019974
ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAA
GGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAGCAGAGACTGATCTTTGCTGGCAAACAGCTGGAGGATGGCC
GCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTTCGCGGTGGCATCATCGAGCCG
TCCCTTCGTCAGCTTGCCCAGAAGTACAACTGTGACAAGATGATCTGCCGCAAGTGCTACGCACGCCTGCACCCCCGTGC
AGTCAACTGCCGCAAGAAGAAGTGCGGCCACACCAACAACCTGCGCCCCAAGAAGAAGGTCAAATAG

Library Parental gene expression (RPM)
SRP017611_brain 110 .43 RPM
SRP017611_kidney 143 .75 RPM
SRP017611_liver 104 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011356 ortholog_one2one 10 retrogenes
retro_amel_1045, retro_amel_1416, retro_amel_1455, retro_amel_1759, retro_amel_1849, retro_amel_214, retro_amel_800, retro_amel_904, retro_amel_941, retro_amel_973,
Bos taurus ENSBTAG00000007737 ortholog_one2one 3 retrogenes
retro_btau_1059, retro_btau_1318, retro_btau_832,
Callithrix jacchus ENSCJAG00000007470 ortholog_one2one 22 retrogenes
retro_cjac_1363, retro_cjac_1388, retro_cjac_1426, retro_cjac_1485, retro_cjac_1521, retro_cjac_1561, retro_cjac_1731, retro_cjac_1743, retro_cjac_2002, retro_cjac_207, retro_cjac_2254, retro_cjac_2292, retro_cjac_2413, retro_cjac_2501, retro_cjac_2505, retro_cjac_2898, retro_cjac_3054, retro_cjac_658, retro_cjac_683, retro_cjac_883, retro_cjac_892, retro_cjac_898,
Equus caballus ENSECAG00000020660 ortholog_one2one 8 retrogenes
retro_ecab_1014, retro_ecab_107, retro_ecab_313, retro_ecab_641, retro_ecab_772, retro_ecab_835, retro_ecab_836, retro_ecab_857,
Felis catus ENSFCAG00000009745 ortholog_one2one 14 retrogenes
retro_fcat_1159, retro_fcat_1204, retro_fcat_1226, retro_fcat_1232, retro_fcat_1382, retro_fcat_1428, retro_fcat_1449, retro_fcat_1540, retro_fcat_1661, retro_fcat_86, retro_fcat_876, retro_fcat_909, retro_fcat_939, retro_fcat_989,
Homo sapiens ENSG00000221983 ortholog_one2one 2 retrogenes
retro_hsap_2622, retro_hsap_4004,
Latimeria chalumnae ENSLACG00000008132 ortholog_one2many 1 retrogene
retro_lcha_11,
Mustela putorius furo ENSMPUG00000015527 possible_ortholog 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 possible_ortholog 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Ochotona princeps ENSOPRG00000004784 ortholog_one2one 6 retrogenes
retro_opri_1016, retro_opri_144, retro_opri_219, retro_opri_458, retro_opri_644, retro_opri_787,
Pongo abelii ENSPPYG00000009746 ortholog_one2many 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Pan troglodytes ENSPTRG00000039223 ortholog_one2one 8 retrogenes
retro_ptro_1142, retro_ptro_1767, retro_ptro_2607, retro_ptro_2718, retro_ptro_2815, retro_ptro_792, retro_ptro_895, retro_ptro_919,
Sarcophilus harrisii ENSSHAG00000007075 ortholog_one2one 3 retrogenes
retro_shar_405, retro_shar_434, retro_shar_703,
Ictidomys tridecemlineatus ENSSTOG00000004678 possible_ortholog 1 retrogene
retro_itri_49,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2one 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_944 72.09 100.00
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2. retro_rnor_1125 90.43 73.44
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3. retro_rnor_1458 84.55 83.59
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4. retro_rnor_2115 76.15 100.00
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5. retro_rnor_2472 60.15 100.00
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6. retro_rnor_2487 60.15 100.00
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7. retro_rnor_2901 75.38 100.00
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Download FASTA sequences of all ENSRNOG00000019974 retrocopies