RetrogeneDB ID: | retro_opri_787 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_30673:1609..1990(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSOPRG00000004784 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 96.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ.KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV | |
Retrocopy | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQNKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
Parental | LRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK |
LRLRGGIIEPS.R.LAQKYNCDKMICRKCYARLHPRAVNCR.KKCGHTNNLRPKKKVK | |
Retrocopy | LRLRGGIIEPSQRHLAQKYNCDKMICRKCYARLHPRAVNCR-KKCGHTNNLRPKKKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |