RetrogeneDB ID: | retro_rnor_2472 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:99936199..99936567(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Uba52 | ||
Ensembl ID: | ENSRNOG00000019974 | ||
Aliases: | Uba52, Rps27a, Ubb | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P62986] |
Percent Identity: | 60.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPP-DQQ-RLIFAGKQLEDGRTLSDYNIQKESTL |
MQIF..T..G.....L...P....E.....IQ.KEGIPP.DQQ..LIFAGK.LED..TL..YNIQKESTL | |
Retrocopy | MQIFM*T*MG>RPLLLRLSP----ETPSIMIQEKEGIPP<DQQ<ELIFAGKHLEDSHTLLNYNIQKESTL |
Parental | HLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHP-RAVNCRKKKCGHTNNL-RPKKKVK |
.LVLRL..GIIE.SL..L.Q.YNCDKMIC.K.Y..LH....VN..K.K.GH.NNL..PKKKVK | |
Retrocopy | YLVLRLHSGIIESSLCHLVQNYNCDKMICHKYYSCLHT<SVVNWYK-KFGHSNNL>APKKKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 110 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 143 .75 RPM |
SRP017611_liver | 0 .00 RPM | 104 .08 RPM |