Parental gene:

ENSLACG00000008132

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127544.1:322427..356907(-)


>ENSLACG00000008132
AAAATGGAGCCAACAGCATCTGGCATGTTTTGTGGCAAAATGCTGAGTATGGTGAACTCTGAAGACGTGAACGCCATTAT
TCAAGCTCAGAGACACATGTTGGATCGGTTTGAAAAGACTAACGAGATGTTACTCAACTTTAATAATCTATCGAATGTGC
GGCTGCAACAGATGAATGAGCGATTTCAGCATCACACACGGACATTGGTGGAGATGAAAAAAGATCTTGATAGTATCTTC
CGAAGAATCCGGACCCTGAAAGGAAAGCTAGCAAAACAATACCCAGATGCTTTTAGCACAAGTGCCAAGATGCAGATCTT
TGTGAAAACTCTGACTGGTAAAACCATCACTCTTGAGGTGGAGCCCAGTGATACAATTGAAAATGTTAAGGCCAAGATTC
AGGATAAGGAAGGAATCCCTCCTGACCAACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCT
GACTACAACATTCAGAAAGAGTCAACCCTGCATTTAGTGCTGCGTCTGCGTGGCGGTATCATCGAGCCCTCTCTTCGCAT
GCTTGCTTGCAAATACAACTGTGACAAAATGATCTGCCGCAAATGCTATGCTCGGCTCCATCCTCGTGCTGTGAATTGCC
GTAAGAAGAAGTGTGGACACACCAATAACCTGCGCCCAAAGAAGAAGCTGAAGTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 534 .73 RPM
DRP000627_kidney 521 .81 RPM
DRP000627_pelvic_fin 444 .17 RPM
DRP000627_pharynx 344 .61 RPM
DRP000627_gill 337 .82 RPM
DRP000627_tail_muscle 227 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011356 ortholog_many2many 10 retrogenes
retro_amel_1045, retro_amel_1416, retro_amel_1455, retro_amel_1759, retro_amel_1849, retro_amel_214, retro_amel_800, retro_amel_904, retro_amel_941, retro_amel_973,
Bos taurus ENSBTAG00000007737 ortholog_one2many 3 retrogenes
retro_btau_1059, retro_btau_1318, retro_btau_832,
Canis familiaris ENSCAFG00000014723 ortholog_one2many 8 retrogenes
retro_cfam_1671, retro_cfam_1725, retro_cfam_1879, retro_cfam_1933, retro_cfam_2205, retro_cfam_600, retro_cfam_654, retro_cfam_873,
Callithrix jacchus ENSCJAG00000007470 ortholog_many2many 22 retrogenes
retro_cjac_1363, retro_cjac_1388, retro_cjac_1426, retro_cjac_1485, retro_cjac_1521, retro_cjac_1561, retro_cjac_1731, retro_cjac_1743, retro_cjac_2002, retro_cjac_207, retro_cjac_2254, retro_cjac_2292, retro_cjac_2413, retro_cjac_2501, retro_cjac_2505, retro_cjac_2898, retro_cjac_3054, retro_cjac_658, retro_cjac_683, retro_cjac_883, retro_cjac_892, retro_cjac_898,
Cavia porcellus ENSCPOG00000000351 ortholog_many2many 3 retrogenes
retro_cpor_1454, retro_cpor_1471, retro_cpor_1502,
Equus caballus ENSECAG00000020660 ortholog_many2many 8 retrogenes
retro_ecab_1014, retro_ecab_107, retro_ecab_313, retro_ecab_641, retro_ecab_772, retro_ecab_835, retro_ecab_836, retro_ecab_857,
Echinops telfairi ENSETEG00000003392 ortholog_one2many 35 retrogenes
retro_etel_1121, retro_etel_113, retro_etel_1165, retro_etel_1229, retro_etel_1520, retro_etel_1521, retro_etel_1598, retro_etel_1618, retro_etel_1623, retro_etel_1644, retro_etel_1657, retro_etel_1707, retro_etel_1709, retro_etel_174, retro_etel_1756, retro_etel_1760, retro_etel_1785, retro_etel_1854, retro_etel_196, retro_etel_2027, retro_etel_2101, retro_etel_2123, retro_etel_2158, retro_etel_2166, retro_etel_268, retro_etel_376, retro_etel_386, retro_etel_406, retro_etel_660, retro_etel_690, retro_etel_70, retro_etel_755, retro_etel_807, retro_etel_843, retro_etel_859,
Felis catus ENSFCAG00000009745 ortholog_many2many 14 retrogenes
retro_fcat_1159, retro_fcat_1204, retro_fcat_1226, retro_fcat_1232, retro_fcat_1382, retro_fcat_1428, retro_fcat_1449, retro_fcat_1540, retro_fcat_1661, retro_fcat_86, retro_fcat_876, retro_fcat_909, retro_fcat_939, retro_fcat_989,
Homo sapiens ENSG00000221983 ortholog_one2many 2 retrogenes
retro_hsap_2622, retro_hsap_4004,
Gorilla gorilla ENSGGOG00000004630 ortholog_many2many 8 retrogenes
retro_ggor_1021, retro_ggor_1045, retro_ggor_1265, retro_ggor_1835, retro_ggor_2579, retro_ggor_2687, retro_ggor_2782, retro_ggor_905,
Macropus eugenii ENSMEUG00000013159 ortholog_one2many 5 retrogenes
retro_meug_1812, retro_meug_1868, retro_meug_441, retro_meug_513, retro_meug_750,
Microcebus murinus ENSMICG00000017583 ortholog_one2many 5 retrogenes
retro_mmur_143, retro_mmur_1486, retro_mmur_150, retro_mmur_633, retro_mmur_708,
Myotis lucifugus ENSMLUG00000029594 ortholog_many2many 5 retrogenes
retro_mluc_1995, retro_mluc_2057, retro_mluc_2203, retro_mluc_44, retro_mluc_829,
Macaca mulatta ENSMMUG00000016085 ortholog_many2many 7 retrogenes
retro_mmul_1184, retro_mmul_1580, retro_mmul_1625, retro_mmul_2183, retro_mmul_2311, retro_mmul_232, retro_mmul_896,
Monodelphis domestica ENSMODG00000003499 ortholog_one2many 1 retrogene
retro_mdom_867,
Mustela putorius furo ENSMPUG00000015527 ortholog_many2many 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 ortholog_many2many 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Otolemur garnettii ENSOGAG00000028000 ortholog_one2many 10 retrogenes
retro_ogar_1345, retro_ogar_1419, retro_ogar_1583, retro_ogar_1604, retro_ogar_1792, retro_ogar_2026, retro_ogar_2370, retro_ogar_2485, retro_ogar_2544, retro_ogar_3337,
Ochotona princeps ENSOPRG00000004784 ortholog_one2many 6 retrogenes
retro_opri_1016, retro_opri_144, retro_opri_219, retro_opri_458, retro_opri_644, retro_opri_787,
Pongo abelii ENSPPYG00000009746 ortholog_many2many 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Pan troglodytes ENSPTRG00000039223 ortholog_one2many 8 retrogenes
retro_ptro_1142, retro_ptro_1767, retro_ptro_2607, retro_ptro_2718, retro_ptro_2815, retro_ptro_792, retro_ptro_895, retro_ptro_919,
Pteropus vampyrus ENSPVAG00000024217 ortholog_one2many 19 retrogenes
retro_pvam_1029, retro_pvam_1102, retro_pvam_1146, retro_pvam_1164, retro_pvam_1320, retro_pvam_1325, retro_pvam_1361, retro_pvam_1434, retro_pvam_1447, retro_pvam_211, retro_pvam_327, retro_pvam_517, retro_pvam_528, retro_pvam_600, retro_pvam_632, retro_pvam_655, retro_pvam_749, retro_pvam_987, retro_pvam_994,
Rattus norvegicus ENSRNOG00000019974 ortholog_one2many 7 retrogenes
retro_rnor_1125, retro_rnor_1458, retro_rnor_2115, retro_rnor_2472, retro_rnor_2487, retro_rnor_2901, retro_rnor_944,
Sorex araneus ENSSARG00000000984 possible_ortholog 11 retrogenes
retro_sara_145, retro_sara_164, retro_sara_192, retro_sara_256, retro_sara_281, retro_sara_331, retro_sara_344, retro_sara_599, retro_sara_67, retro_sara_687, retro_sara_94,
Sarcophilus harrisii ENSSHAG00000007075 ortholog_one2many 3 retrogenes
retro_shar_405, retro_shar_434, retro_shar_703,
Sus scrofa ENSSSCG00000013907 ortholog_one2many 1 retrogene
retro_sscr_988,
Ictidomys tridecemlineatus ENSSTOG00000004678 ortholog_many2many 1 retrogene
retro_itri_49,
Tursiops truncatus ENSTTRG00000021461 ortholog_one2many 1 retrogene
retro_ttru_1582,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2many 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_11 99.22 55.41
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Download FASTA sequences of all ENSLACG00000008132 retrocopies