RetrogeneDB ID: | retro_btau_1847 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:104334444..104334810(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000046794 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCOC | ||
Ensembl ID: | ENSBTAG00000022109 | ||
Aliases: | None | ||
Description: | short coiled-coil protein [Source:RefSeq peptide;Acc:NP_001178356] |
Percent Identity: | 95.9 % |
Parental protein coverage: | 76.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QLVQVFRPEASYRALPLPAPQKADHSSRILYPRRRSLLPKMMNADMDAVDAENQVELEEKTRLINQVLEL |
QLVQV.RPEASYR.LPLPAPQKADHSSRILYPRR.SLLPKMMNADMD.VDAENQVELEEKTRLINQVLEL | |
Retrocopy | QLVQVSRPEASYRTLPLPAPQKADHSSRILYPRRGSLLPKMMNADMDVVDAENQVELEEKTRLINQVLEL |
Parental | QHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK |
QHTLEDLSARVDAVKEENLKLKSENQVL.QYIENLMSASSVFQTTDTKSKRK | |
Retrocopy | QHTLEDLSARVDAVKEENLKLKSENQVLKQYIENLMSASSVFQTTDTKSKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 32 .44 RPM |
ERP005899_muscle | 0 .00 RPM | 17 .68 RPM |
SRP017611_brain | 0 .05 RPM | 113 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 72 .96 RPM |
SRP017611_liver | 0 .00 RPM | 11 .40 RPM |
SRP030211_testis | 0 .02 RPM | 36 .66 RPM |