RetrogeneDB ID: | retro_cfam_1564 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 35:4625051..4625343(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCOC | ||
Ensembl ID: | ENSCAFG00000003699 | ||
Aliases: | None | ||
Description: | short coiled-coil protein [Source:HGNC Symbol;Acc:20335] |
Percent Identity: | 77. % |
Parental protein coverage: | 79.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SSRILYPRPKSLLPEMMNADMDAVDAENQVELEEKTRLINQVLEL-QHTLEDTDLSARVDAVKEENLKLK |
SSRILYP.P.SLL.EM.NA....V.AENQVELEEKTRLINQ.LEL.QHTLED..L.A.VDA...ENLKLK | |
Retrocopy | SSRILYPMPRSLLLEMINANRAKVGAENQVELEEKTRLINQMLEL>QHTLED--LAASVDAMTAENLKLK |
Parental | SENQVLGQYIENLMSASSVFQTTDTKSKRK |
SENQVLGQYIENLMS..SVFQTTD..S.RK | |
Retrocopy | SENQVLGQYIENLMSVPSVFQTTDSESQRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 32 .00 RPM |
SRP017611_brain | 0 .00 RPM | 33 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .11 RPM |
SRP017611_liver | 0 .00 RPM | 1 .74 RPM |