RetrogeneDB ID: | retro_pabe_1119 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:60855044..60855402(+) | ||
Located in intron of: | ENSPPYG00000005870 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCOC | ||
Ensembl ID: | ENSPPYG00000015077 | ||
Aliases: | None | ||
Description: | short coiled-coil protein [Source:HGNC Symbol;Acc:20335] |
Percent Identity: | 81.15 % |
Parental protein coverage: | 75.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VQVSRL-EVSAGSLPLLTPQAE-DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLEL |
VQVS.L.E.S..SLPL..PQ....HSSRILYPRPKSLLPKM.N.DMDAVDAEN..ELE.KT.LINQVLEL | |
Retrocopy | VQVSSL<EASSPSLPLPAPQTF<HHSSRILYPRPKSLLPKMTNIDMDAVDAENHLELEGKTQLINQVLEL |
Parental | QHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK |
QHTLEDL..R.DAV.EENLKLKSENQVLGQY.EN.MSASSVFQTTDTKSKRK | |
Retrocopy | QHTLEDLPVRGDAVTEENLKLKSENQVLGQYTENFMSASSVFQTTDTKSKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 69 .31 RPM |
SRP007412_heart | 0 .00 RPM | 33 .99 RPM |
SRP007412_kidney | 0 .00 RPM | 24 .89 RPM |
SRP007412_liver | 0 .00 RPM | 13 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1347 |
Pan troglodytes | retro_ptro_922 |
Gorilla gorilla | retro_ggor_1048 |
Macaca mulatta | retro_mmul_2186 |
Callithrix jacchus | retro_cjac_713 |