RetrogeneDB ID: | retro_pabe_423 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:100825165..100825539(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCOC | ||
Ensembl ID: | ENSPPYG00000015077 | ||
Aliases: | None | ||
Description: | short coiled-coil protein [Source:HGNC Symbol;Acc:20335] |
Percent Identity: | 79.37 % |
Parental protein coverage: | 77.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RRQLVQVSRLEVSAGSLPLLTPQA-EDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK-TRLINQ |
R.QLVQVSR.E.SA..LPLL.PQ..E.HSS.IL.PR.KSLLPKMM.ADMDAVDAENQVELEEK.T.LINQ | |
Retrocopy | RCQLVQVSRSEASARTLPLLAPQT>EEHSSCILCPRLKSLLPKMMSADMDAVDAENQVELEEK>T*LINQ |
Parental | VLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK |
V...QHTLEDLSAR..A.KEENLKLKSENQV.GQ.IENLMSA..VFQTTDT.SKRK | |
Retrocopy | VWKFQHTLEDLSARANAGKEENLKLKSENQVVGQHIENLMSAFGVFQTTDTESKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 69 .31 RPM |
SRP007412_heart | 0 .00 RPM | 33 .99 RPM |
SRP007412_kidney | 0 .00 RPM | 24 .89 RPM |
SRP007412_liver | 0 .00 RPM | 13 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_228 |
Pan troglodytes | retro_ptro_198 |
Gorilla gorilla | retro_ggor_291 |