RetrogeneDB ID: | retro_btau_941 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 21:51127629..51128233(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSME3 | ||
Ensembl ID: | ENSBTAG00000019918 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.46 % |
Parental protein coverage: | 81.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL-PVPDPILLTNSHDGLDGP |
K..SFRE..T.EAE.LV...F..K.L...SFLKEPILNIH.LTQIHSD..L..VP.P.L.TNSH.GL..P | |
Retrocopy | KIESFREWVTNEAEYLV-EYFSSKML*PVSFLKEPILNIHNLTQIHSDLSL<VVPGPVLVTNSHNGLEEP |
Parental | TYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNN |
T.K.RRL.ECEEAF.GT.VFV...GMLKSNQQLVDI.EKVKP.I.LLI.KC...KMWVQLL.PRI.DGN. | |
Retrocopy | TSK*RRLSECEEAFHGTRVFVV-HGMLKSNQQLVDIFEKVKPKIWLLILKCDMTKMWVQLLTPRIDDGND |
Parental | FGVSIQEETVAELRTVESEAASYLDQ-ISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRL |
FGV.IQE.TV.ELR.....AAS.L.Q.ISRYY.TRAK...KIAKYP..........E.D....I.L.L | |
Retrocopy | FGVYIQEKTVTELRML--RAASHLNQ<ISRYYVTRAKSIFKIAKYPS*TMTEIDEKEYDSLQLIILEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 13 .48 RPM |
ERP005899_muscle | 0 .00 RPM | 30 .93 RPM |
SRP017611_brain | 0 .00 RPM | 37 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .45 RPM |
SRP017611_liver | 0 .00 RPM | 23 .41 RPM |
SRP030211_testis | 0 .01 RPM | 88 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000013688 | 2 retrocopies | |
Bos taurus | ENSBTAG00000019918 | 2 retrocopies |
retro_btau_1249, retro_btau_941 ,
|
Bos taurus | ENSBTAG00000021395 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013111 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012552 | 1 retrocopy | |
Equus caballus | ENSECAG00000012620 | 2 retrocopies | |
Homo sapiens | ENSG00000131467 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013446 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015986 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008372 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009225 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017385 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028833 | 1 retrocopy |