Parental gene:

PSME3, ENSPPYG00000008372

Aliases:None
Description:Proteasome activator complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5RFD3]
Organism:Orangutan (Pongo abelii)
Coordinates:17:46581008..46591916(-)


>ENSPPYG00000008372
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCAGGGAGCGGATCACAAGTGAGGCAGA
AGACTTGGTGGCAAATTTTTTCCCAAAGAAGTTGTTAGAACTTGATAGTTTTCTGAAGGAACCAATCTTAAACATCCATG
ACCTAACTCAGATCCACTCTGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCATGATGGACTGGAT
GGTCCCACTTATAAGAAGCGAAGGTTGGATGATTGTGAAGAAGCCTTCCAAGGAACCAAGGTGTTTGTGATGCCCAATGG
GATGCTGAAAAGCAACCAGCAGCTGGTGGACATTATTGAGAAAGTGAAACCTGAGATCCGGCTGTTGATTGAGAAATGTA
ACACGGTCAAAATGTGGGTACAGCTCCTGATTCCCAGGATAGAAGATGGAAACAACTTTGGGGTGTCCATTCAGGAGGAA
ACGGTTGCAGAGCTAAGAACTGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGC
CAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAAT
ATATCAGCCTTCGGCTCATAATATCAGAGCTGAGGAATCAATATGTCACTCTACATGACATGATCCTGAAAAATATCGAG
AAGATCAAACGGCCCCGGAGCAGCAATGCAGAGACTCTGTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 86 .59 RPM
SRP007412_cerebellum 55 .45 RPM
SRP007412_heart 23 .72 RPM
SRP007412_kidney 70 .87 RPM
SRP007412_liver 39 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013688 ortholog_one2many 2 retrogenes
retro_acar_118, retro_acar_37,
Bos taurus ENSBTAG00000019918 ortholog_one2one 2 retrogenes
retro_btau_1249, retro_btau_941,
Callithrix jacchus ENSCJAG00000013111 ortholog_one2one 1 retrogene
retro_cjac_2307,
Cavia porcellus ENSCPOG00000012552 ortholog_one2one 1 retrogene
retro_cpor_1204,
Equus caballus ENSECAG00000012620 ortholog_one2many 2 retrogenes
retro_ecab_29, retro_ecab_827,
Homo sapiens ENSG00000131467 ortholog_one2one 1 retrogene
retro_hsap_245,
Loxodonta africana ENSLAFG00000013446 ortholog_one2one 1 retrogene
retro_lafr_725,
Mustela putorius furo ENSMPUG00000010027 ortholog_one2one 1 retrogene
retro_mputfur_619,
Oryctolagus cuniculus ENSOCUG00000015986 ortholog_one2one 1 retrogene
retro_ocun_641,
Pongo abelii ENSPPYG00000005684 within_species_paralog 4 retrogenes
retro_pabe_1000, retro_pabe_2486, retro_pabe_2512, retro_pabe_2669,
Pan troglodytes ENSPTRG00000009225 ortholog_one2one 1 retrogene
retro_ptro_212,
Sus scrofa ENSSSCG00000017385 ortholog_one2one 1 retrogene
retro_sscr_784,
Ictidomys tridecemlineatus ENSSTOG00000028833 ortholog_one2one 1 retrogene
retro_itri_153,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_413 69.39 57.87
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Download FASTA sequences of all ENSPPYG00000008372 retrocopies