Parental gene:

PSME3, ENSCPOG00000012552

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_53:12444381..12448868(+)


>ENSCPOG00000012552
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCCGGGAGCGGATCACAAGTGAGGCAGA
GGACTTGGTGGCAAATTTTTTTCCAAAGAAGTTGTTAGAACTTGATAGTTTTTTAAAGGAACCAATCCTAAACATCCATG
ACCTAACTCAGATCCACTCGGACATGAATCTCCCCGTCCCTGACCCCATTCTCCTCACCAATAGCCACGATGGGCTGGAT
GGTCCCACTTACAAGAAGCGGAAGTTGGATGAGTGTGAAGAGGCTTTGCAAGGAACCAAGGTGTTTGTGATGCCCAATGG
GATGCTGAAGAGCAACCAGCAGCTGGTGGACATCATTGAGAAGGTGAAGCCTGAGATCCGGCTGCTGATCGAGAAGTGCA
ACACGGTCAAAATGTGGGTACAGCTCCTGATTCCCAGGATAGAAGATGGCAACAACTTCGGGGTGTCCATTCAGGAGGAG
ACAGTTGCAGAGCTAAGAACTGTTGAGAGCGAAGCTGCGTCCTACCTGGACCAGATCTCCAGATATTACATTACCAGAGC
CAAATTGGTATCTAAAATAGCTAAATACCCCCACGTGGAGGATTATCGCCGCACGGTGACGGAGATCGACGAGAAGGAGT
ATATCAGCCTGCGCCTCATCATCTCAGAGCTGAGGAACCAATACGTCACTCTACACGACATGATCCTGAAAAACATCGAG
AAGATCAAACGGCCTCGGAGCAGCAATGCGGAGACGCTGTACTGA

Library Parental gene expression (RPM)
SRP017611_brain 48 .08 RPM
SRP017611_kidney 44 .49 RPM
SRP017611_liver 31 .60 RPM
SRP040447_lung 45 .93 RPM
SRP040447_skeletal_muscle 40 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013688 ortholog_one2many 2 retrogenes
retro_acar_118, retro_acar_37,
Bos taurus ENSBTAG00000019918 ortholog_one2one 2 retrogenes
retro_btau_1249, retro_btau_941,
Callithrix jacchus ENSCJAG00000013111 ortholog_one2one 1 retrogene
retro_cjac_2307,
Equus caballus ENSECAG00000012620 ortholog_one2many 2 retrogenes
retro_ecab_29, retro_ecab_827,
Homo sapiens ENSG00000131467 ortholog_one2one 1 retrogene
retro_hsap_245,
Loxodonta africana ENSLAFG00000013446 ortholog_one2one 1 retrogene
retro_lafr_725,
Mustela putorius furo ENSMPUG00000010027 ortholog_one2one 1 retrogene
retro_mputfur_619,
Oryctolagus cuniculus ENSOCUG00000015986 ortholog_one2one 1 retrogene
retro_ocun_641,
Pongo abelii ENSPPYG00000008372 ortholog_one2one 1 retrogene
retro_pabe_413,
Pan troglodytes ENSPTRG00000009225 ortholog_one2one 1 retrogene
retro_ptro_212,
Sus scrofa ENSSSCG00000017385 ortholog_one2one 1 retrogene
retro_sscr_784,
Ictidomys tridecemlineatus ENSSTOG00000028833 ortholog_one2one 1 retrogene
retro_itri_153,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1204 69.39 57.87
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Download FASTA sequences of all ENSCPOG00000012552 retrocopies