RetrogeneDB ID: | retro_chof_1537 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_31735:9916..10504(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPK1 | ||
Ensembl ID: | ENSCHOG00000001227 | ||
Aliases: | None | ||
Description: | thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:17358] |
Percent Identity: | 72.68 % |
Parental protein coverage: | 82.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ACADGGANRLYDITEGERESILPELINGDFDSIRTEVRKHYSIKGCELI-STPDQDNTDFTKCLQVLQKK |
A.ADGGA..LYDIT.GERES.LPE.INGDFDSIR.EV...YSIK.CE.I.STPDQD.TDFTKC....QKK | |
Retrocopy | ASADGGASHLYDITDGERESFLPEFINGDFDSIRLEVKEYYSIKCCEMI<STPDQDHTDFTKCSKRRQKK |
Parental | IEEKAL-QVDMIVTLGGLGGRFDQIMASVNT-LFQAIDITPLPIIIIQDKSLIYLLQPGKHKLHVNTGME |
...K..........LGG....FDQIMASV.T.LFQ..DITPLPIIIIQDKSLI.LLQPGK.KLHVNTGME | |
Retrocopy | KPYKLI<MIVTLGALGGC---FDQIMASVST<LFQTTDITPLPIIIIQDKSLIHLLQPGK*KLHVNTGME |
Parental | GDWCGLIPVGQPCNHVTTTGLKWNLXNHVLGFGILVSTFNTYTYDGSGVVTVDTDQPLLWTMAIK |
.D...LI.VG.PCN.VT.TGLKWNL.NHVLG.GILVSTFN..TYD.SG.VTV.TDQPLLWTMAIK | |
Retrocopy | SD*YALIHVGHPCNQVTITGLKWNLTNHVLGLGILVSTFN--TYDESGIVTVETDQPLLWTMAIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001227 | 23 retrocopies |
retro_chof_1004, retro_chof_1093, retro_chof_1416, retro_chof_1458, retro_chof_1537 , retro_chof_1683, retro_chof_1732, retro_chof_191, retro_chof_1927, retro_chof_2202, retro_chof_2413, retro_chof_2507, retro_chof_2577, retro_chof_468, retro_chof_472, retro_chof_550, retro_chof_630, retro_chof_665, retro_chof_701, retro_chof_801, retro_chof_917, retro_chof_954, retro_chof_988,
|
Dasypus novemcinctus | ENSDNOG00000018545 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000010062 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004213 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025468 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000020728 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010214 | 2 retrocopies |