RetrogeneDB ID: | retro_chof_1732 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_37082:2086..2688(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPK1 | ||
Ensembl ID: | ENSCHOG00000001227 | ||
Aliases: | None | ||
Description: | thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:17358] |
Percent Identity: | 80.39 % |
Parental protein coverage: | 82.04 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MEHVFTP-LELLLPSGNLKYCLLILNQPLDDCFRHLWSKALLKACADGGANRLYDITEGERESI-LPELI |
ME.V..P.LE.LLP.GNLKYCLLI..QPLDD.F..LWSKA.LKA.ADGGA..LY.ITEGERESI.LPE.I | |
Retrocopy | MELVLMP>LEPLLPTGNLKYCLLIRHQPLDDRFHYLWSKARLKAYADGGAICLYHITEGERESI<LPEFI |
Parental | NGDFDSIRTEVRKHYSIKGCELISTPDQDNTDFTKCLQVLQKKIEEKALQVDMIVTLGGLGGRFDQIMAS |
NGDFDSIR.EVR....IKGC.LISTPDQD.TDFTKCL..L.KKIEEKALQVDMIVTL.GLGG.FDQIMAS | |
Retrocopy | NGDFDSIRPEVREYNNIKGCGLISTPDQDHTDFTKCLHRL*KKIEEKALQVDMIVTLRGLGGNFDQIMAS |
Parental | VNT-LFQAIDITPLPIIIIQDKSLIYLLQPGKHKLHVNTGMEGDWCGLIPVGQPCNHVTTTGLK |
V.T.LF...DITPLP.II.Q.KSLIYLLQPGKHKLHVNTGMEGDWCGLIPVGQPCN.VTTTG.K | |
Retrocopy | VST<LF*VTDITPLPLIINQEKSLIYLLQPGKHKLHVNTGMEGDWCGLIPVGQPCNQVTTTGQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001227 | 23 retrocopies |
retro_chof_1004, retro_chof_1093, retro_chof_1416, retro_chof_1458, retro_chof_1537, retro_chof_1683, retro_chof_1732 , retro_chof_191, retro_chof_1927, retro_chof_2202, retro_chof_2413, retro_chof_2507, retro_chof_2577, retro_chof_468, retro_chof_472, retro_chof_550, retro_chof_630, retro_chof_665, retro_chof_701, retro_chof_801, retro_chof_917, retro_chof_954, retro_chof_988,
|
Dasypus novemcinctus | ENSDNOG00000018545 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000010062 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004213 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025468 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000020728 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010214 | 2 retrocopies |