RetrogeneDB ID:

retro_meug_1153

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold30881:424..914(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TPK1
Ensembl ID:ENSMEUG00000010062
Aliases:None
Description:thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:17358]


Retrocopy-Parental alignment summary:






>retro_meug_1153
ATGGAACTGATCCTTCCCCCGCTAGAATGTCTGCTTCCCAGTGGGAATCTGAAATGTTGCCTACTGATCCTCAATCAGCC
TTTGGACAGAAGCCGTTTCCATCATCTGTGGAGCAAAGCCCTTCTAAGAGGCTGCGCTGATGGAGGAGCTAACCACTTGT
ATGAGGTCAGGGAAGGAGAGCAGGAACACTTCTCATCCGATTACATCAGTGGAGATTTTGATTTGATTAGACCTGAAGTC
AAAGAGTTCTACAAAGTCCAGGGATATGAATTTGTCTCAACTCCTGATCAAGACTACACCGACTTTACTAAATGCCTTCA
AGTCTTCCAGAAGAAGATCGTGGAGAAGAAGCTTCAGGTAGACCAGATTGTGACCTTGGGTGGACTGGCAGGACAGTTTG
ACCAGATCATGGTTTCTGTGGAGATCCTTTTCCATGCAAATGACCATCTCATCAGTGCCTGTTACCATCATACAAATGGA
TTTCCTCATC

ORF - retro_meug_1153 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.83 %
Parental protein coverage: 67.08 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMEHPLTPLECLLPTGNLKYCLLILNQPLDRSHFHHLWSKALLKACADGGANHLYDVTEEDRESFLPEYIS
ME..L.PLECLLP.GNLK.CLLILNQPLDRS.FHHLWSKALL..CADGGANHLY.V.E...E.F...YIS
RetrocopyMELILPPLECLLPSGNLKCCLLILNQPLDRSRFHHLWSKALLRGCADGGANHLYEVREGEQEHFSSDYIS
ParentalGDFDSIRPEVKEYYQVKGCELVSTPDQDLTDFTKCLQVLQKKIVEKDLQVDLIVALGGLAGRFDQIMASV
GDFD.IRPEVKE.Y.V.G.E.VSTPDQD.TDFTKCLQV.QKKIVEK.LQVD.IV.LGGLAG.FDQIM.SV
RetrocopyGDFDLIRPEVKEFYKVQGYEFVSTPDQDYTDFTKCLQVFQKKIVEKKLQVDQIVTLGGLAGQFDQIMVSV
ParentalETLFHAT-TITPVPVIIIQADSLI
E.LFHA..TI..VPV.IIQ.D.LI
RetrocopyEILFHAN>TISSVPVTIIQMDFLI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1153 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1153 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG0000000122723 retrocopies
Dasypus novemcinctus ENSDNOG000000185454 retrocopies
Macropus eugenii ENSMEUG00000010062 1 retrocopy
retro_meug_1153 ,
Myotis lucifugus ENSMLUG000000042131 retrocopy
Monodelphis domestica ENSMODG000000254682 retrocopies
Ornithorhynchus anatinus ENSOANG000000207281 retrocopy
Vicugna pacos ENSVPAG000000102142 retrocopies



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