RetrogeneDB ID: | retro_oana_44 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig19872:7365..7749(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ox_plat1_531208 | ||
Ensembl ID: | ENSOANG00000020728 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.62 % |
Parental protein coverage: | 55.17 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | PEVMEYYKVKGCELIETADQNFTDFTKCLKVLLEKIKEKDLQVDMIVTLGGLGGRFDQIMASVETLFHAT |
PEVME.Y.VKGCELIETADQNFTDFTKCLKV.LEKIK.KDLQVDMIVTL..LGGRFDQ.MASVETLFHAT | |
Retrocopy | PEVME*Y*VKGCELIETADQNFTDFTKCLKVPLEKIKGKDLQVDMIVTLSRLGGRFDQLMASVETLFHAT |
Parental | SLTSLPIVVIQEDSLVYLLQPGKHRLQVNTGLEGEWCGLIPVGFPCRVTTTGLKWNLT |
.LTSLPIVVIQEDS..YLLQPGKHRLQVNTGLEGE.CGLIPVGFPC.VTTTGLKWNLT | |
Retrocopy | NLTSLPIVVIQEDSFIYLLQPGKHRLQVNTGLEGE*CGLIPVGFPCHVTTTGLKWNLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .40 RPM |
SRP007412_heart | 0 .00 RPM | 1 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .40 RPM |
SRP007412_liver | 0 .00 RPM | 4 .07 RPM |
SRP007412_testis | 0 .00 RPM | 4 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001227 | 23 retrocopies |
retro_chof_1004, retro_chof_1093, retro_chof_1416, retro_chof_1458, retro_chof_1537, retro_chof_1683, retro_chof_1732, retro_chof_191, retro_chof_1927, retro_chof_2202, retro_chof_2413, retro_chof_2507, retro_chof_2577, retro_chof_468, retro_chof_472, retro_chof_550, retro_chof_630, retro_chof_665, retro_chof_701, retro_chof_801, retro_chof_917, retro_chof_954, retro_chof_988,
|
Dasypus novemcinctus | ENSDNOG00000018545 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000010062 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004213 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025468 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000020728 | 1 retrocopy |
retro_oana_44 ,
|
Vicugna pacos | ENSVPAG00000010214 | 2 retrocopies |