RetrogeneDB ID: | retro_chof_472 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_112846:2072..2566(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPK1 | ||
Ensembl ID: | ENSCHOG00000001227 | ||
Aliases: | None | ||
Description: | thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:17358] |
Percent Identity: | 76.79 % |
Parental protein coverage: | 68.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VRKHYSIKGCELISTPDQDNTDFTKCLQVLQKKIEEKALQVDMIVTLGGLGGRFDQIMASVNTLFQAIDI |
V...YSI.G.ELI.TPDQD.TDFT.CL..L.KKIEEK.L.VDMIVTLGGLGG.FDQ.M.SVNTLFQA.D. | |
Retrocopy | VKEYYSIRGGELIFTPDQDQTDFTRCL*MLKKKIEEKDLEVDMIVTLGGLGGSFDQMMSSVNTLFQATDT |
Parental | TPLPIIIIQDKSLIYLLQPGKHKLHVNTGMEGDWCGLIPVG-QPCNHVTTTGLKWNLXNHVLGFGILVST |
TPLPII.IQ.KSLI.LLQPG.HKL.VNTGMEGDWCGLIPVG.Q.CNHVTTTGL..NL.NH.LGFGILVST | |
Retrocopy | TPLPIIVIQEKSLIDLLQPGQHKLYVNTGMEGDWCGLIPVG<QQCNHVTTTGLW*NLTNHGLGFGILVST |
Parental | FNTYTYDGSGVVTVDTDQPLLWTMAIKG |
.N..T.DGS..V.VDTDQPLLWT..I.G | |
Retrocopy | SN--TCDGSVLVAVDTDQPLLWTTDIEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001227 | 23 retrocopies |
retro_chof_1004, retro_chof_1093, retro_chof_1416, retro_chof_1458, retro_chof_1537, retro_chof_1683, retro_chof_1732, retro_chof_191, retro_chof_1927, retro_chof_2202, retro_chof_2413, retro_chof_2507, retro_chof_2577, retro_chof_468, retro_chof_472 , retro_chof_550, retro_chof_630, retro_chof_665, retro_chof_701, retro_chof_801, retro_chof_917, retro_chof_954, retro_chof_988,
|
Dasypus novemcinctus | ENSDNOG00000018545 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000010062 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004213 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025468 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000020728 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010214 | 2 retrocopies |