Parental gene: | TPK1, ENSDNOG00000018545 |
| Aliases: | None |
| Description: | thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:17358] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_6843:233682..594646(-) |
>ENSDNOG00000018545
ATGGAGCATGTGTTTACCCCGTTGGAACCCCTGCTTCCCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTGCCCGAATTCATCAATGGAGATTTTGATTCCATTAGGCCTGAAGTCAAA
GAATACTACACTAGTAAGGGATGTGAGCTGATTTCAACTCCTGATCAAAACTATACTGATTTTACTAAGTGCCTTCTAGA
GCTCCAAAAGAAGATAGAAGAAAAAAACCTTGAGATTGATATGATTGTGACGCTTGGAGGACTTGCTGGACATTTTGACC
AGATTATGAGCATCTTGTTTCAAGCAACTCATATCACTCCTTTGCCACTTATAATAATTCAAGAGGAATCTCTTATCTAC
CTGCCCCAACCAGGAAAGCACAAGTTGCATGTAAATACCGGGATGGAAGGTGACTGGTGTGGCCTTGTTCCTATTGGACA
GCACTGCAATCACGTTACCACAACAGGCCTAAAGTGGAACCTCACAAATCACATGCTTGGTTTTGGAATACTAGTCAGTA
CTTCTAATCCCTACAACGGATCTGGGGTAGTGACTGTGGAAACTGATCAGCCACTTCTCTGGACCATGGCCATCAAAAAC
TAA
ATGGAGCATGTGTTTACCCCGTTGGAACCCCTGCTTCCCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTGCCCGAATTCATCAATGGAGATTTTGATTCCATTAGGCCTGAAGTCAAA
GAATACTACACTAGTAAGGGATGTGAGCTGATTTCAACTCCTGATCAAAACTATACTGATTTTACTAAGTGCCTTCTAGA
GCTCCAAAAGAAGATAGAAGAAAAAAACCTTGAGATTGATATGATTGTGACGCTTGGAGGACTTGCTGGACATTTTGACC
AGATTATGAGCATCTTGTTTCAAGCAACTCATATCACTCCTTTGCCACTTATAATAATTCAAGAGGAATCTCTTATCTAC
CTGCCCCAACCAGGAAAGCACAAGTTGCATGTAAATACCGGGATGGAAGGTGACTGGTGTGGCCTTGTTCCTATTGGACA
GCACTGCAATCACGTTACCACAACAGGCCTAAAGTGGAACCTCACAAATCACATGCTTGGTTTTGGAATACTAGTCAGTA
CTTCTAATCCCTACAACGGATCTGGGGTAGTGACTGTGGAAACTGATCAGCCACTTCTCTGGACCATGGCCATCAAAAAC
TAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 0 .39 RPM |
| SRP012922_cerebellum | 0 .27 RPM |
| SRP012922_heart | 0 .23 RPM |
| SRP012922_kidney | 1 .37 RPM |
| SRP012922_liver | 1 .08 RPM |
| SRP012922_lung | 1 .37 RPM |
| SRP012922_quadricep_muscle | 0 .35 RPM |
| SRP012922_spleen | 0 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000001227 | ortholog_one2one | 23 retrogenes |
retro_chof_1004, retro_chof_1093, retro_chof_1416, retro_chof_1458, retro_chof_1537, retro_chof_1683, retro_chof_1732, retro_chof_191, retro_chof_1927, retro_chof_2202, retro_chof_2413, retro_chof_2507, retro_chof_2577, retro_chof_468, retro_chof_472, retro_chof_550, retro_chof_630, retro_chof_665, retro_chof_701, retro_chof_801, retro_chof_917, retro_chof_954, retro_chof_988,
|
| Macropus eugenii | ENSMEUG00000010062 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000004213 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000025468 | ortholog_one2many | 2 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000020728 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000010214 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_1080 | 79.35 | 64.58 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_1592 | 77.56 | 65.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_2405 | 64.71 | 55.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_2523 | 65.38 | 52.50 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000018545 retrocopies