Parental gene:

PRDX1, ENSCJAG00000004807

Aliases:None
Description:peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:80361793..80372483(-)


>ENSCJAG00000004807
ATGTCTTCAGGAAATGCTAAAATTGGGCACCCTGCCCCCAACTTCAAAGCCACAGCTGTTATGCCAGATGGTCAGTTTAA
AGATATCAGCCTGTCGGACTACAAAGGAAAATATGTTGTGTTCTTCTTTTACCCTCTTGACTTCACCTTTGTGTGCCCCA
CGGAGATCATTGCTTTCAGTGATAGGGCAGAAGAATTTAAGAAACTCAACTGCCAAGTGATTGGTGCTTCTGTGGATTCT
CACTTCTGTCACCTGGCATGGATCAACACACCTAAGAAACAAGGAGGACTGGGACCCATGAACATTCCTTTGATATCAGA
CCCGAAGCGCACCATTGCTCAGGATTATGGGGTCTTAAAGGCAGATGAAGGCATCTCATTCAGGGGCCTCTTTATCATTG
ATGATAAGGGTGTTCTTCGGCAGATCACTGTAAATGACCTCCCTGTTGGCCGCTCTGTGGATGAGACTTTGAGACTAGTT
CAGGCCTTCCAGTTCACTGACAAACATGGGGAAGTGTGCCCAGCTGGCTGGAAACCTGGCAGTGATACCATCAAGCCTGA
TGTCCAAAAGAGCAAAGAATATTTCTGCAAACAGAAGTGA

Library Parental gene expression (RPM)
SRP051959_colon 91 .59 RPM
SRP051959_heart 43 .53 RPM
SRP051959_kidney 79 .96 RPM
SRP051959_liver 130 .09 RPM
SRP051959_lung 36 .81 RPM
SRP051959_lymph_node 36 .16 RPM
SRP051959_skeletal_muscle 27 .28 RPM
SRP051959_spleen 53 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013632 ortholog_one2one 2 retrogenes
retro_amel_1116, retro_amel_539,
Bos taurus ENSBTAG00000003642 ortholog_one2one 2 retrogenes
retro_btau_1299, retro_btau_1446,
Canis familiaris ENSCAFG00000004567 ortholog_one2many 5 retrogenes
retro_cfam_1313, retro_cfam_270, retro_cfam_577, retro_cfam_834, retro_cfam_988,
Choloepus hoffmanni ENSCHOG00000003358 ortholog_one2one 5 retrogenes
retro_chof_1140, retro_chof_134, retro_chof_1714, retro_chof_2035, retro_chof_2450,
Ciona intestinalis ENSCING00000003002 ortholog_one2many 1 retrogene
retro_cint_8,
Callithrix jacchus ENSCJAG00000004882 within_species_paralog 4 retrogenes
retro_cjac_1269, retro_cjac_1795, retro_cjac_2356, retro_cjac_2392,
Callithrix jacchus ENSCJAG00000019636 within_species_paralog 3 retrogenes
retro_cjac_1333, retro_cjac_3082, retro_cjac_653,
Cavia porcellus ENSCPOG00000014137 ortholog_one2one 3 retrogenes
retro_cpor_1079, retro_cpor_290, retro_cpor_398,
Dasypus novemcinctus ENSDNOG00000018488 ortholog_one2one 1 retrogene
retro_dnov_2071,
Dipodomys ordii ENSDORG00000008975 ortholog_one2one 1 retrogene
retro_dord_727,
Equus caballus ENSECAG00000008678 ortholog_one2many 1 retrogene
retro_ecab_81,
Echinops telfairi ENSETEG00000007922 ortholog_one2one 11 retrogenes
retro_etel_112, retro_etel_1157, retro_etel_1245, retro_etel_1442, retro_etel_1838, retro_etel_2121, retro_etel_2122, retro_etel_308, retro_etel_367, retro_etel_460, retro_etel_556,
Felis catus ENSFCAG00000028484 ortholog_one2one 1 retrogene
retro_fcat_1714,
Homo sapiens ENSG00000117450 ortholog_one2one 1 retrogene
retro_hsap_4230,
Macropus eugenii ENSMEUG00000006820 ortholog_one2one 4 retrogenes
retro_meug_1694, retro_meug_1711, retro_meug_2059, retro_meug_662,
Macaca mulatta ENSMMUG00000006221 ortholog_one2one 1 retrogene
retro_mmul_762,
Monodelphis domestica ENSMODG00000002382 ortholog_one2one 2 retrogenes
retro_mdom_1787, retro_mdom_555,
Mus musculus ENSMUSG00000028691 ortholog_one2one 5 retrogenes
retro_mmus_1466, retro_mmus_1659, retro_mmus_1786, retro_mmus_3129, retro_mmus_3167,
Nomascus leucogenys ENSNLEG00000014524 ortholog_one2one 2 retrogenes
retro_nleu_1040, retro_nleu_1627,
Oryctolagus cuniculus ENSOCUG00000005951 ortholog_one2one 2 retrogenes
retro_ocun_1064, retro_ocun_1124,
Otolemur garnettii ENSOGAG00000002303 ortholog_one2many 4 retrogenes
retro_ogar_1219, retro_ogar_1333, retro_ogar_1588, retro_ogar_486,
Pongo abelii ENSPPYG00000001411 ortholog_one2one 1 retrogene
retro_pabe_3409,
Pan troglodytes ENSPTRG00000000675 ortholog_one2one 1 retrogene
retro_ptro_2874,
Pteropus vampyrus ENSPVAG00000015001 ortholog_one2one 1 retrogene
retro_pvam_179,
Rattus norvegicus ENSRNOG00000017194 ortholog_one2one 8 retrogenes
retro_rnor_1401, retro_rnor_1488, retro_rnor_1574, retro_rnor_1656, retro_rnor_1736, retro_rnor_2063, retro_rnor_2292, retro_rnor_2401,
Sorex araneus ENSSARG00000004703 ortholog_one2one 5 retrogenes
retro_sara_153, retro_sara_370, retro_sara_399, retro_sara_633, retro_sara_95,
Sus scrofa ENSSSCG00000003914 ortholog_one2one 1 retrogene
retro_sscr_719,
Ictidomys tridecemlineatus ENSSTOG00000023413 ortholog_one2one 2 retrogenes
retro_itri_631, retro_itri_817,
Tupaia belangeri ENSTBEG00000015997 ortholog_one2one 4 retrogenes
retro_tbel_3922, retro_tbel_4017, retro_tbel_4024, retro_tbel_4669,
Tarsius syrichta ENSTSYG00000011031 ortholog_one2one 1 retrogene
retro_tsyr_1781,
Tursiops truncatus ENSTTRG00000008858 ortholog_one2many 4 retrogenes
retro_ttru_1350, retro_ttru_1878, retro_ttru_234, retro_ttru_36,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1201 88.55 65.83
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2. retro_cjac_2884 83.76 58.79
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Download FASTA sequences of all ENSCJAG00000004807 retrocopies