Parental gene:

HNRNPA2B1, ENSDNOG00000012928

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_333:120285..127769(-)


>ENSDNOG00000012928
GTTAGTCGGAGGGAAGGTTCTAGAAAAGCGGCGGCAGCGGCACTAGCGGCAGTAGCAGCAGCGCCGGGGTCCGTGCGGAG
CTGTTCCCGGCGTTGTTTCTTGAGCAGCGGCAGTTCTCACAACAGCGCCAGGACGAGTCCGGCTCGTGTTCGTCCGCGGA
GATCTCTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGAGAGAAAAGGAACAATTC
CGTAAACTCTTTATTGGTGGCTTAAGTTTTGAAACAACAGAAGAAAGTTTGAGGAACTACTATGAGCAATGGGGAAAACT
TACAGACTGTGTGGTGATGCGGGATCCTGCAAGTAAGAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTG
AGGTTGATGCTGCAATGGCTGCTAGACCTCATTCAATTGATGGGAGAGTGGTTGAGCCGAAACGTGCTGTAGCAAGAGAG
GAGTCTGGAAAACCAGGGGCTCATGTAACTGTGAAGAAGTTGTTTGTTGGTGGAATTAAAGAAGATACTGAGGAACATCA
CCTTAGAGATTACTTCGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAATCTGGAAAGAAAAGAG
GCTTTGGTTTTGTGACTTTTGATGACCATGATCCTGTTGATAAAATTGTATTGCAGAAATACCATACCATCAATGGTCAT
AATGCAGAAGTAAGAAAGGCTTTGTCTCGACAAGAAATGCAGGAAGTCCAAAGTTCTAGAAGCGGAAGAGGAGGCAATTT
TGGTTTTGGAGATTCACGTGGTGGTGGTGGAAATTTTGGACCAGGACCAGGAAGTAACTTTAGAGGAGGATCAGATGGAT
ATGGAAGTGGTCGTGGATTTGGAGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCT
GGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTA
TGACAACTATGGAGGAGGAAATTATGGAAGTGGAAGTTACAATGATTTTGGAAATTATAATCAGCAACCTTCTAACTATG
GTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGC
AGTGGAGGAAGTGGGGGTTATGGAGGGAGGAGCCGATATTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 487 .92 RPM
SRP012922_cerebellum 500 .25 RPM
SRP012922_heart 188 .87 RPM
SRP012922_kidney 341 .42 RPM
SRP012922_liver 267 .97 RPM
SRP012922_lung 397 .08 RPM
SRP012922_quadricep_muscle 281 .95 RPM
SRP012922_spleen 486 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 ortholog_one2one 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000003887 within_species_paralog 7 retrogenes
retro_dnov_1175, retro_dnov_1182, retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
Dasypus novemcinctus ENSDNOG00000009228 other_paralog 7 retrogenes
retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Dasypus novemcinctus ENSDNOG00000019022 other_paralog 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 ortholog_one2one 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2one 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 ortholog_one2one 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Ictidomys tridecemlineatus ENSSTOG00000006202 ortholog_one2one 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000000709 ortholog_one2one 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1978 98.22 67.31
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSDNOG00000012928 retrocopies