RetrogeneDB ID: | retro_dnov_1208 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_163423:3612..3917(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSDNOG00000006250 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 67.31 % |
Parental protein coverage: | 56.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSK |
..R.VV..K.EYFLKW..F.DADNTWEPEEN.D.PEL...FL.S...GK.K...KRKSLS.SESDDSKSK | |
Retrocopy | VERGVVYEKMEYFLKW*RFPDADNTWEPEENFDFPELTKVFLKSPILGKKK-MYKRKSLSESESDDSKSK |
Parental | KK-RDAADKPRGFARGLDPERIIGATDSSGELMF |
.K.RDAADKPR..A.GL.P....GATDSS.ELMF | |
Retrocopy | NK<RDAADKPRCSAGGLHPQCTMGATDSSRELMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 32 .48 RPM |
SRP012922_cerebellum | 0 .00 RPM | 44 .68 RPM |
SRP012922_heart | 0 .00 RPM | 30 .16 RPM |
SRP012922_kidney | 0 .00 RPM | 21 .08 RPM |
SRP012922_liver | 0 .00 RPM | 38 .08 RPM |
SRP012922_lung | 0 .00 RPM | 57 .88 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 23 .71 RPM |
SRP012922_spleen | 0 .00 RPM | 65 .13 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006250 | 19 retrocopies |
retro_dnov_1136, retro_dnov_1174, retro_dnov_1208 , retro_dnov_1270, retro_dnov_1605, retro_dnov_2306, retro_dnov_2307, retro_dnov_2397, retro_dnov_2543, retro_dnov_2605, retro_dnov_2633, retro_dnov_321, retro_dnov_359, retro_dnov_385, retro_dnov_445, retro_dnov_772, retro_dnov_794, retro_dnov_833, retro_dnov_844,
|
Felis catus | ENSFCAG00000015224 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000006998 | 11 retrocopies | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies |