Parental gene:

CBX3, ENSSSCG00000016711

Aliases:None
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:Pig (Sus scrofa)
Coordinates:18:50968277..50979509(-)


>ENSSSCG00000016711
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAAAATGGAAAAAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTTGTAGAAAAAGTACTGGACCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTAAAGTGGAAGGGGT
TTACAGATGCAGACAATACTTGGGAACCTGAAGAAAATTTGGATTGTCCAGAGTTAATTGAAGCATTTCTTAATTCTCAA
AAAGCTGGTAAAGAAAAAGATGGAGCAAAAAGAAAGTCATTATCTGACAGTGAATCTGATGATAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGATAAACCAAGAGGTTTTGCCAGAGGTCTTGATCCAGAACGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTAATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCGGACTTGGTGCTGGCAAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGGCTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .43 RPM
SRP014902_testis 47 .81 RPM
SRP018288_heart 55 .35 RPM
SRP018288_kidney 64 .62 RPM
SRP018288_liver 47 .33 RPM
SRP018288_lung 96 .23 RPM
SRP018856_adipose 16 .27 RPM
SRP035408_brain 80 .67 RPM
SRP035408_liver 52 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005969 ortholog_one2many 1 retrogene
retro_amel_1184,
Canis familiaris ENSCAFG00000002897 ortholog_one2many 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Choloepus hoffmanni ENSCHOG00000013843 ortholog_one2one 22 retrogenes
retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269, retro_chof_2347, retro_chof_2379, retro_chof_2435, retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
Callithrix jacchus ENSCJAG00000007952 ortholog_one2many 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Cavia porcellus ENSCPOG00000015168 ortholog_one2many 1 retrogene
retro_cpor_66,
Dasypus novemcinctus ENSDNOG00000006250 ortholog_one2one 19 retrogenes
retro_dnov_1136, retro_dnov_1174, retro_dnov_1208, retro_dnov_1270, retro_dnov_1605, retro_dnov_2306, retro_dnov_2307, retro_dnov_2397, retro_dnov_2543, retro_dnov_2605, retro_dnov_2633, retro_dnov_321, retro_dnov_359, retro_dnov_385, retro_dnov_445, retro_dnov_772, retro_dnov_794, retro_dnov_833, retro_dnov_844,
Dipodomys ordii ENSDORG00000005487 ortholog_one2one 11 retrogenes
retro_dord_309, retro_dord_405, retro_dord_437, retro_dord_440, retro_dord_456, retro_dord_502, retro_dord_629, retro_dord_630, retro_dord_655, retro_dord_700, retro_dord_780,
Equus caballus ENSECAG00000012780 ortholog_one2one 1 retrogene
retro_ecab_784,
Felis catus ENSFCAG00000015224 ortholog_one2many 6 retrogenes
retro_fcat_1005, retro_fcat_1103, retro_fcat_1485, retro_fcat_1519, retro_fcat_336, retro_fcat_473,
Homo sapiens ENSG00000122565 ortholog_one2one 9 retrogenes
retro_hsap_1071, retro_hsap_1145, retro_hsap_1902, retro_hsap_2332, retro_hsap_2771, retro_hsap_3368, retro_hsap_3650, retro_hsap_766, retro_hsap_910,
Gorilla gorilla ENSGGOG00000025853 ortholog_one2many 6 retrogenes
retro_ggor_1928, retro_ggor_2281, retro_ggor_2466, retro_ggor_2467, retro_ggor_635, retro_ggor_845,
Loxodonta africana ENSLAFG00000006907 ortholog_one2many 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Microcebus murinus ENSMICG00000006998 ortholog_one2one 11 retrogenes
retro_mmur_1015, retro_mmur_1030, retro_mmur_1076, retro_mmur_1178, retro_mmur_1497, retro_mmur_1500, retro_mmur_1548, retro_mmur_386, retro_mmur_421, retro_mmur_68, retro_mmur_685,
Myotis lucifugus ENSMLUG00000007591 ortholog_one2one 2 retrogenes
retro_mluc_2486, retro_mluc_813,
Mus musculus ENSMUSG00000029836 ortholog_one2many 1 retrogene
retro_mmus_77,
Nomascus leucogenys ENSNLEG00000014931 ortholog_one2one 9 retrogenes
retro_nleu_141, retro_nleu_1685, retro_nleu_2462, retro_nleu_373, retro_nleu_397, retro_nleu_511, retro_nleu_676, retro_nleu_944, retro_nleu_964,
Otolemur garnettii ENSOGAG00000016583 ortholog_one2many 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Procavia capensis ENSPCAG00000004904 ortholog_one2one 2 retrogenes
retro_pcap_108, retro_pcap_166,
Pongo abelii ENSPPYG00000017714 ortholog_one2one 10 retrogenes
retro_pabe_2112, retro_pabe_2243, retro_pabe_2724, retro_pabe_2770, retro_pabe_2997, retro_pabe_3608, retro_pabe_758, retro_pabe_786, retro_pabe_892, retro_pabe_951,
Pan troglodytes ENSPTRG00000019003 ortholog_one2one 10 retrogenes
retro_ptro_17, retro_ptro_1706, retro_ptro_1875, retro_ptro_2289, retro_ptro_2475, retro_ptro_395, retro_ptro_537, retro_ptro_630, retro_ptro_729, retro_ptro_780,
Pteropus vampyrus ENSPVAG00000006297 ortholog_one2one 2 retrogenes
retro_pvam_294, retro_pvam_786,
Rattus norvegicus ENSRNOG00000011814 ortholog_one2many 2 retrogenes
retro_rnor_120, retro_rnor_301,
Sorex araneus ENSSARG00000008011 ortholog_one2one 2 retrogenes
retro_sara_496, retro_sara_709,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000017529 within_species_paralog 1 retrogene
retro_sscr_635,
Ictidomys tridecemlineatus ENSSTOG00000006223 ortholog_one2one 4 retrogenes
retro_itri_1093, retro_itri_1682, retro_itri_1764, retro_itri_912,
Tarsius syrichta ENSTSYG00000008159 ortholog_one2many 6 retrogenes
retro_tsyr_1459, retro_tsyr_1545, retro_tsyr_1552, retro_tsyr_1645, retro_tsyr_203, retro_tsyr_583,
Tursiops truncatus ENSTTRG00000000711 ortholog_one2one 7 retrogenes
retro_ttru_1238, retro_ttru_1247, retro_ttru_1851, retro_ttru_294, retro_ttru_52, retro_ttru_591, retro_ttru_644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_204 83.33 75.41
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2. retro_sscr_420 84.86 100.00
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3. retro_sscr_755 82.50 86.34
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4. retro_sscr_1031 88.62 90.71
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Download FASTA sequences of all ENSSSCG00000016711 retrocopies