RetrogeneDB ID: | retro_sscr_420 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:89151404..89151945(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000010343 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSSSCG00000016711 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 84.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
MASNKTTL.K.GKKQNGKSKKVEEAEPEEFVVEKVLDR.VVNGKVEYFLKWKGFTDADN.WEPEENLDCP | |
Retrocopy | MASNKTTLPKVGKKQNGKSKKVEEAEPEEFVVEKVLDRHVVNGKVEYFLKWKGFTDADNSWEPEENLDCP |
Parental | ELIEAFLNSQKAGKEKDGAKRKSLSDSESDDSKSKKK-RDAADKPRGFARGLDPERIIGATDSSGELMFL |
ELIEAFLNSQKAGKEKDG.KRKSLS.S......SK.K.RD.ADKPRG.ARGLD.ERIIGAT..SGELMFL | |
Retrocopy | ELIEAFLNSQKAGKEKDGIKRKSLSNS--ESDDSKSK<RDTADKPRGCARGLDLERIIGATGNSGELMFL |
Parental | M-KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
...WKDSDEADLVLAKEANM..PQIV.AFYE.RL.WHSCPE.EAQ | |
Retrocopy | V<EWKDSDEADLVLAKEANMTSPQIVTAFYEDRLPWHSCPEGEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 7 .43 RPM |
SRP014902_testis | 0 .00 RPM | 47 .81 RPM |
SRP018288_heart | 0 .00 RPM | 55 .35 RPM |
SRP018288_kidney | 0 .00 RPM | 64 .62 RPM |
SRP018288_liver | 0 .00 RPM | 47 .33 RPM |
SRP018288_lung | 0 .00 RPM | 96 .23 RPM |
SRP018856_adipose | 0 .00 RPM | 16 .27 RPM |
SRP035408_brain | 0 .00 RPM | 80 .67 RPM |
SRP035408_liver | 0 .00 RPM | 52 .75 RPM |