RetrogeneDB ID:

retro_mmur_1030

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_16591:7937..8480(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CBX3
Ensembl ID:ENSMICG00000006998
Aliases:None
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]


Retrocopy-Parental alignment summary:






>retro_mmur_1030
TCCAATAAAACTACATTGCAAAAAAACAGGAAAGAAACAGATTGGGAAGAGTGAAAAGGTTGAAGAGGCAGAGCCGGAAT
AATTTGTGATGGAAAAGTACTGAATTGATGTGTAGTAAATGGGAAAGTGGAGTTTTTCCTGCAGTGGAAAGGATTTGCAG
ATGCTAGCAATACTTGGGAACCTGAGGAAAATTCAAATTGTTCAGAGTTAATTGAGGCATTTCTTAATTCTCAAAAGGCT
GGTAAAGAAAAAGGGTGGTACAAAAAGAAAATATTTTTCTGACAGTGAATGTGCTGATAGCAAATCAAAGAAGAAAAGAG
ATGCTGCTGACAAACCAAGAGGATTTGCCATTTGTCTTGATCCTGAAAGAATGATCTGTGGCACAGACAGAGTGGAGGAG
TCATGTTCCTCATGGAATGGAAAGATTCACGTGAGGCAGATTTGGTGCTGGGAAAAGAGGCAAATGTGAAGTGTCTTGAA
GTTGTGATTGCTTTTTATGAAAAGAGACTAACTTGGCATTCTTGCCCAGATGATGAAGCTCAA

ORF - retro_mmur_1030 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.84 %
Parental protein coverage: 99.45 %
Number of stop codons detected: 2
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalSNKTTLQK-MGKKQNGKSKKVEEAEPEEFVVEK-VLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP
SNKTTLQK..GKKQ.GKS.KVEEAEPE.FV.EK.VL...VVNGKVE.FL.WKGF.DA.NTWEPEEN..C.
RetrocopySNKTTLQK>TGKKQIGKSEKVEEAEPE*FVMEK<VLN*CVVNGKVEFFLQWKGFADASNTWEPEENSNCS
ParentalELIEAFLNSQKAGKEK-DGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATD-SSGELMF
ELIEAFLNSQKAGKEK..GTKRK..SDSE..DSKSKKKRDAADKPRGFA..LDPER.I..TD..SG..MF
RetrocopyELIEAFLNSQKAGKEK>GGTKRKYFSDSECADSKSKKKRDAADKPRGFAICLDPERMICGTD<QSGGVMF
ParentalLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ
LM.WKDS.EADLVL.KEAN.KC...VIAFYE.RLTWHSCP.DEAQ
RetrocopyLMEWKDSREADLVLGKEANVKCLEVVIAFYEKRLTWHSCPDDEAQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1030 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1030 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 54 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG0000000625019 retrocopies
Felis catus ENSFCAG000000152246 retrocopies
Microcebus murinus ENSMICG00000006998 11 retrocopies
Microcebus murinus ENSMICG000000095104 retrocopies
Ochotona princeps ENSOPRG000000117139 retrocopies
Sarcophilus harrisii ENSSHAG000000179131 retrocopy
Sus scrofa ENSSSCG000000167114 retrocopies



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