RetrogeneDB ID: | retro_opri_300 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_4882:299009..299534(-) | ||
Located in intron of: | ENSOPRG00000000666 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSOPRG00000011713 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 98.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN |
.KMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN | |
Retrocopy | RKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN |
Parental | SQKAGKEKDGAKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEA |
SQKAGKEKDGAKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERI.G.TDSSGELMFLMKWKDSDEA | |
Retrocopy | SQKAGKEKDGAKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERISGPTDSSGELMFLMKWKDSDEA |
Parental | DLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
DLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ | |
Retrocopy | DLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |