RetrogeneDB ID: | retro_sscr_1031 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 9:78846957..78847448(+) | ||
Located in intron of: | ENSSSCG00000029092 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSSSCG00000016711 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 88.62 % |
Parental protein coverage: | 90.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
MASNKTT.QKMGKKQNGKSK.VEEAEPEEF.VEKVLD.RVVNGK.EYFLK.KGFTDADNTWE.EENLDCP | |
Retrocopy | MASNKTTFQKMGKKQNGKSKTVEEAEPEEFTVEKVLD*RVVNGKMEYFLK*KGFTDADNTWESEENLDCP |
Parental | ELIEAFLNSQKAGKEKDGAKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLM |
ELIEAFL..QKAGKEKDGAKRKSLSDSESDDSKS.KKRDAADKPRGFARGLD.ERI..A.DSSGELMFLM | |
Retrocopy | ELIEAFL-YQKAGKEKDGAKRKSLSDSESDDSKS-KKRDAADKPRGFARGLDLERITDAIDSSGELMFLM |
Parental | KWKDSDEADLVLA-KEANMKCPQIVIA |
KWKD.DEADLVLA.K.ANMK.PQI.IA | |
Retrocopy | KWKDADEADLVLA<KKANMKFPQIIIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 7 .43 RPM |
SRP014902_testis | 0 .00 RPM | 47 .81 RPM |
SRP018288_heart | 0 .05 RPM | 55 .35 RPM |
SRP018288_kidney | 0 .00 RPM | 64 .62 RPM |
SRP018288_liver | 0 .00 RPM | 47 .33 RPM |
SRP018288_lung | 0 .20 RPM | 96 .23 RPM |
SRP018856_adipose | 0 .00 RPM | 16 .27 RPM |
SRP035408_brain | 0 .19 RPM | 80 .67 RPM |
SRP035408_liver | 0 .09 RPM | 52 .75 RPM |