Parental gene:

ENSFCAG00000015224

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:A2:118296900..118305670(+)


>ENSFCAG00000015224
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAGAATGGAAAGAGTAAAAAAGTAGAAGAGGCAGAGCC
TGAAGAATTTGTGGTGGAAAAAGTACTGGACCGACGTGTAGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAGTTAATTGAAGCGTTTCTTAATTCTCAA
AAAGCTGGTAAAGAAAAAGATGGCACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGATAGCAAATCCAAGAAGAA
AAGAGATGCTGCTGATAAACCAAGAGGCTTTGCCAGAGGTCTTGATCCTGAACGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTAATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCAAAAGAGGCAAATATGAAGTGT
CCTCAGATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCGGAAGATGAAGCTCAATAA

Library Parental gene expression (RPM)
SRP017611_brain 31 .33 RPM
SRP017611_kidney 25 .87 RPM
SRP017611_liver 21 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013843 possible_ortholog 22 retrogenes
retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269, retro_chof_2347, retro_chof_2379, retro_chof_2435, retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
Cavia porcellus ENSCPOG00000015168 possible_ortholog 1 retrogene
retro_cpor_66,
Dasypus novemcinctus ENSDNOG00000006250 ortholog_one2one 19 retrogenes
retro_dnov_1136, retro_dnov_1174, retro_dnov_1208, retro_dnov_1270, retro_dnov_1605, retro_dnov_2306, retro_dnov_2307, retro_dnov_2397, retro_dnov_2543, retro_dnov_2605, retro_dnov_2633, retro_dnov_321, retro_dnov_359, retro_dnov_385, retro_dnov_445, retro_dnov_772, retro_dnov_794, retro_dnov_833, retro_dnov_844,
Felis catus ENSFCAG00000006056 within_species_paralog 1 retrogene
retro_fcat_514,
Homo sapiens ENSG00000122565 possible_ortholog 9 retrogenes
retro_hsap_1071, retro_hsap_1145, retro_hsap_1902, retro_hsap_2332, retro_hsap_2771, retro_hsap_3368, retro_hsap_3650, retro_hsap_766, retro_hsap_910,
Microcebus murinus ENSMICG00000006998 ortholog_one2one 11 retrogenes
retro_mmur_1015, retro_mmur_1030, retro_mmur_1076, retro_mmur_1178, retro_mmur_1497, retro_mmur_1500, retro_mmur_1548, retro_mmur_386, retro_mmur_421, retro_mmur_68, retro_mmur_685,
Nomascus leucogenys ENSNLEG00000014931 possible_ortholog 9 retrogenes
retro_nleu_141, retro_nleu_1685, retro_nleu_2462, retro_nleu_373, retro_nleu_397, retro_nleu_511, retro_nleu_676, retro_nleu_944, retro_nleu_964,
Ochotona princeps ENSOPRG00000011713 ortholog_one2many 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Sorex araneus ENSSARG00000008011 possible_ortholog 2 retrogenes
retro_sara_496, retro_sara_709,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2many 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2many 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_336 70.29 73.22
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2. retro_fcat_473 81.32 98.36
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3. retro_fcat_1005 74.14 93.44
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4. retro_fcat_1103 73.47 78.69
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5. retro_fcat_1485 77.78 59.02
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6. retro_fcat_1519 66.03 84.70
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Download FASTA sequences of all ENSFCAG00000015224 retrocopies