RetrogeneDB - Parental gene ENSOPRG00000011713 details

							
>ENSOPRG00000011713
CAAAAAATGGGAAAGAAGCAGAATGGAAAGAGTAAAAAGGTCGAAGAAGCAGAGCCTGAAGAGTTTGTGGTGGAGAAGGT

GCTGGACCGCCGTGTGGTCAATGGGAAGGTGGAGTACTTCCTGAAGTGGAAGGGATTCACAGATGCTGACAATACTTGGG

AACCTGAAGAAAATCTAGATTGTCCAGAGTTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGT

GCCAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGTAAATCAAAGAAGAAAAGAGATGCTGCTGACAAACCGAG

GGGCTTTGCCAGGGGTCTTGATCCCGAACGAATAATTGGTGCCACAGACAGCAGTGGGGAGTTGATGTTTCTCATGAAGT

GGAAAGATTCAGATGAAGCTGACTTGGTGCTGGCAAAAGAAGCAAATATGAAATGTCCTCAGATTGTAATTGCTTTTTAT

GAAGAGAGACTGACTTGGCATTCTTGTCCGGAAGATGAAGCTCAGTAA

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000005969	ortholog_one2many	1 retrogene	retro_amel_1184,
Canis familiaris	ENSCAFG00000002897	ortholog_one2many	11 retrogenes	retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Choloepus hoffmanni	ENSCHOG00000013843	ortholog_one2one	22 retrogenes	retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269, retro_chof_2347, retro_chof_2379, retro_chof_2435, retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
Callithrix jacchus	ENSCJAG00000007952	ortholog_one2many	8 retrogenes	retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Cavia porcellus	ENSCPOG00000015168	ortholog_one2many	1 retrogene	retro_cpor_66,
Dasypus novemcinctus	ENSDNOG00000006250	ortholog_one2one	19 retrogenes	retro_dnov_1136, retro_dnov_1174, retro_dnov_1208, retro_dnov_1270, retro_dnov_1605, retro_dnov_2306, retro_dnov_2307, retro_dnov_2397, retro_dnov_2543, retro_dnov_2605, retro_dnov_2633, retro_dnov_321, retro_dnov_359, retro_dnov_385, retro_dnov_445, retro_dnov_772, retro_dnov_794, retro_dnov_833, retro_dnov_844,
Dipodomys ordii	ENSDORG00000005487	ortholog_one2one	11 retrogenes	retro_dord_309, retro_dord_405, retro_dord_437, retro_dord_440, retro_dord_456, retro_dord_502, retro_dord_629, retro_dord_630, retro_dord_655, retro_dord_700, retro_dord_780,
Equus caballus	ENSECAG00000012780	ortholog_one2one	1 retrogene	retro_ecab_784,
Felis catus	ENSFCAG00000015224	ortholog_one2many	6 retrogenes	retro_fcat_1005, retro_fcat_1103, retro_fcat_1485, retro_fcat_1519, retro_fcat_336, retro_fcat_473,
Homo sapiens	ENSG00000122565	ortholog_one2one	9 retrogenes	retro_hsap_1071, retro_hsap_1145, retro_hsap_1902, retro_hsap_2332, retro_hsap_2771, retro_hsap_3368, retro_hsap_3650, retro_hsap_766, retro_hsap_910,
Gorilla gorilla	ENSGGOG00000025853	ortholog_one2many	6 retrogenes	retro_ggor_1928, retro_ggor_2281, retro_ggor_2466, retro_ggor_2467, retro_ggor_635, retro_ggor_845,
Loxodonta africana	ENSLAFG00000006907	ortholog_one2many	3 retrogenes	retro_lafr_661, retro_lafr_687, retro_lafr_776,
Microcebus murinus	ENSMICG00000006998	ortholog_one2one	11 retrogenes	retro_mmur_1015, retro_mmur_1030, retro_mmur_1076, retro_mmur_1178, retro_mmur_1497, retro_mmur_1500, retro_mmur_1548, retro_mmur_386, retro_mmur_421, retro_mmur_68, retro_mmur_685,
Myotis lucifugus	ENSMLUG00000007591	ortholog_one2one	2 retrogenes	retro_mluc_2486, retro_mluc_813,
Mus musculus	ENSMUSG00000029836	ortholog_one2many	1 retrogene	retro_mmus_77,
Nomascus leucogenys	ENSNLEG00000014931	ortholog_one2one	9 retrogenes	retro_nleu_141, retro_nleu_1685, retro_nleu_2462, retro_nleu_373, retro_nleu_397, retro_nleu_511, retro_nleu_676, retro_nleu_944, retro_nleu_964,
Otolemur garnettii	ENSOGAG00000016583	ortholog_one2many	1 retrogene	retro_ogar_136,
Ochotona princeps	ENSOPRG00000003699	within_species_paralog	1 retrogene	retro_opri_552,
Procavia capensis	ENSPCAG00000004904	ortholog_one2one	2 retrogenes	retro_pcap_108, retro_pcap_166,
Pongo abelii	ENSPPYG00000017714	ortholog_one2one	10 retrogenes	retro_pabe_2112, retro_pabe_2243, retro_pabe_2724, retro_pabe_2770, retro_pabe_2997, retro_pabe_3608, retro_pabe_758, retro_pabe_786, retro_pabe_892, retro_pabe_951,
Pan troglodytes	ENSPTRG00000019003	ortholog_one2one	10 retrogenes	retro_ptro_17, retro_ptro_1706, retro_ptro_1875, retro_ptro_2289, retro_ptro_2475, retro_ptro_395, retro_ptro_537, retro_ptro_630, retro_ptro_729, retro_ptro_780,
Pteropus vampyrus	ENSPVAG00000006297	ortholog_one2one	2 retrogenes	retro_pvam_294, retro_pvam_786,
Rattus norvegicus	ENSRNOG00000011814	ortholog_one2many	2 retrogenes	retro_rnor_120, retro_rnor_301,
Sorex araneus	ENSSARG00000008011	ortholog_one2one	2 retrogenes	retro_sara_496, retro_sara_709,
Sarcophilus harrisii	ENSSHAG00000017913	ortholog_one2one	1 retrogene	retro_shar_153,
Sus scrofa	ENSSSCG00000016711	ortholog_one2one	4 retrogenes	retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,
Ictidomys tridecemlineatus	ENSSTOG00000006223	ortholog_one2one	4 retrogenes	retro_itri_1093, retro_itri_1682, retro_itri_1764, retro_itri_912,
Tarsius syrichta	ENSTSYG00000008159	ortholog_one2many	6 retrogenes	retro_tsyr_1459, retro_tsyr_1545, retro_tsyr_1552, retro_tsyr_1645, retro_tsyr_203, retro_tsyr_583,
Tursiops truncatus	ENSTTRG00000000711	ortholog_one2one	7 retrogenes	retro_ttru_1238, retro_ttru_1247, retro_ttru_1851, retro_ttru_294, retro_ttru_52, retro_ttru_591, retro_ttru_644,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_opri_103	95.43	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_opri_159	63.07	98.86	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_opri_209	60.39	86.29	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_opri_300	98.29	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_opri_429	60.39	86.29	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_opri_569	98.29	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_opri_598	95.43	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_opri_728	82.08	60.57	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_opri_733	63.07	98.86	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSOPRG00000011713 retrocopies

Parental gene:	CBX3, ENSOPRG00000011713
Aliases:	None
Description:	chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:	*Southern American pika (Ochotona princeps)*
Coordinates:	GeneScaffold_192:158485..164393(+)

Parental gene:

CBX3, ENSOPRG00000011713