RetrogeneDB ID: | retro_dnov_2037 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_43617:5084..5485(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSDNOG00000014592 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 59.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIIRCRKQDFPLVKAAVQKAIPMYKIATK-K |
DLLNEAKQRLSK..K..TR.QV.L.GLVL.GLYQLLEPRMIIRCRK.DFPLVK.AVQK..PM.KIATK.. | |
Retrocopy | DLLNEAKQRLSKAAKNITRHQVMLEGLVL*GLYQLLEPRMIIRCRK*DFPLVKPAVQKGFPMDKIATK<N |
Parental | EVDVQIDQEAFLPEDVAGGVEIYSGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD |
.VD..I.QEA..PE..A..VE.YS.D..IKVSNT.ES..DL.AQQMMPE.RGAL.G.NANRKFLD | |
Retrocopy | HVDAHIAQEANVPEELADSVEFYSRDHTIKVSNT*ESWMDLMAQQMMPEIRGALLGVNANRKFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 42 .20 RPM |
SRP012922_cerebellum | 0 .00 RPM | 102 .41 RPM |
SRP012922_heart | 0 .00 RPM | 23 .67 RPM |
SRP012922_kidney | 0 .00 RPM | 58 .59 RPM |
SRP012922_liver | 0 .00 RPM | 24 .00 RPM |
SRP012922_lung | 0 .00 RPM | 34 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 14 .54 RPM |
SRP012922_spleen | 0 .00 RPM | 46 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017489 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016151 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000017277 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014592 | 3 retrocopies |
retro_dnov_2037 , retro_dnov_44, retro_dnov_688,
|
Echinops telfairi | ENSETEG00000019283 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000003802 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000014876 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000018452 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000018109 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006964 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004591 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000016094 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011905 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008300 | 2 retrocopies |