RetrogeneDB ID:

retro_dnov_44

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_16061:43659..44340(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSDNOG00000007277
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP6V1E1
Ensembl ID:ENSDNOG00000014592
Aliases:None
Description:ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857]


Retrocopy-Parental alignment summary:






>retro_dnov_44
ATGGCGCTGAGCGATGTGGATGTGCAGAAGCAGATTAAGCACATGATGGCTTTCATCGAGCAGGAAGCCAACGAGAAGGC
CGAAGAAATAGACGCCAAGGCCGAAGAAGAGTTCAACATCGAGAAAGGTCGCCTTGTGCAGACCCAAAGACTGAAGATTA
TGGAGTATTACGAGAAGAAGGAGAAGCAGATAGAGCAGCAGAAGAAGATCCAGTTGTCCGCTGTGAAGAATCAGGCAAGG
CTCAAAGTCCTGCGAGGCCGGGACAACCTTATCTCAGAACTGCTGAATGAGGCAAAGCGGAGACTCATCAAGCTCGAGGC
CAACCCGGAGGTCTACCAGGAGCTGATGGATAAACTAGTGCTCCAGGGTCTGCTGCGCCTGCTGGAGTCCCACGTGATCG
TGCGCTGCCGGCCCCAGGACCTCCTCGTGGCAGAGGCCGCCGTGCAGAAAGCCATCCCCAAGTACAAGGTGGCCTCCCAA
AAACATGTGGAGGTCCACGTGGATCAAGAGGTGCACCTGCCCGAGCACATGGCCGGGGGCGTGGAGGTCTACAGTGCGGA
TCAGAGAATAAAGCTTTCCAATACCCTGGAAAGTCGACTGGATCTCTTAGCTCAGCAAAGGATGCCAGAAATACGAAAGG
CCTTGTTTGGAGCAAATCCCAACAGAAAGTATTTTATATAA

ORF - retro_dnov_44 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.64 %
Parental protein coverage: 58.41 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIIRCRKQDFPLVKAAVQKAIPMYKIATKKE
.LLNEAK.RL.K.......YQ.L.D.LVLQGL..LLE...I.RCR.QD.....AAVQKAIP.YK.A..K.
RetrocopyELLNEAKRRLIKLEANPEVYQELMDKLVLQGLLRLLESHVIVRCRPQDLLVAEAAVQKAIPKYKVASQKH
ParentalVDVQIDQEAFLPEDVAGGVEIYSGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKF
V.V..DQE..LPE..AGGVE.YS.D..IK.SNTLESRLDL.AQQ.MPE.R.ALFGAN.NRK.
RetrocopyVEVHVDQEVHLPEHMAGGVEVYSADQRIKLSNTLESRLDLLAQQRMPEIRKALFGANPNRKY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .00 RPM 42 .20 RPM
SRP012922_cerebellum 0 .00 RPM 102 .41 RPM
SRP012922_heart 0 .23 RPM 23 .67 RPM
SRP012922_kidney 0 .55 RPM 58 .59 RPM
SRP012922_liver 0 .00 RPM 24 .00 RPM
SRP012922_lung 0 .00 RPM 34 .36 RPM
SRP012922_quadricep_muscle 0 .00 RPM 14 .54 RPM
SRP012922_spleen 0 .34 RPM 46 .59 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_44 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000174892 retrocopies
Canis familiaris ENSCAFG000000161517 retrocopies
Callithrix jacchus ENSCJAG000000172771 retrocopy
Dasypus novemcinctus ENSDNOG00000014592 3 retrocopies
retro_dnov_2037, retro_dnov_44 , retro_dnov_688,
Echinops telfairi ENSETEG000000192832 retrocopies
Loxodonta africana ENSLAFG000000038024 retrocopies
Myotis lucifugus ENSMLUG000000148762 retrocopies
Monodelphis domestica ENSMODG000000184524 retrocopies
Mustela putorius furoENSMPUG000000181092 retrocopies
Oryctolagus cuniculus ENSOCUG000000069641 retrocopy
Ochotona princeps ENSOPRG000000045912 retrocopies
Procavia capensis ENSPCAG000000160941 retrocopy
Rattus norvegicus ENSRNOG000000119051 retrocopy
Sarcophilus harrisii ENSSHAG000000083002 retrocopies



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