RetrogeneDB ID: | retro_pcap_455 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_9611:27956..28625(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSPCAG00000016094 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 95.07 % |
Parental protein coverage: | 98.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSDADVQK-IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQM |
LSDADVQK.IKHMMAFIEQEANEKAEE.DAKAEEEFNIEKGRLVQTQRLKIMEY.EKKEKQIEQQKKIQM | |
Retrocopy | LSDADVQKQIKHMMAFIEQEANEKAEELDAKAEEEFNIEKGRLVQTQRLKIMEYCEKKEKQIEQQKKIQM |
Parental | SNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFP |
SNLMNQARLKVLRARDDLITDLLNEAK.RLSKVVKDTTRYQVLL.GLVLQ.LYQLLEPRM.VRCRKQDFP | |
Retrocopy | SNLMNQARLKVLRARDDLITDLLNEAKHRLSKVVKDTTRYQVLLGGLVLQDLYQLLEPRMTVRCRKQDFP |
Parental | LVKAAVQKAIPMYKIATKKDVDVQIDQEAYLPEDIAGGVEIYNGDCKIKVSNTLESRLDLIAQQMMPEVR |
LVKAAVQKAI..YKIATKKDVDVQIDQEAYLPED.AGGVEIYNGDCKIKVSNTLES.LDLIAQQMMPEVR | |
Retrocopy | LVKAAVQKAISVYKIATKKDVDVQIDQEAYLPEDMAGGVEIYNGDCKIKVSNTLESWLDLIAQQMMPEVR |
Parental | GALFGANANRKFL |
GALFGANANRKFL | |
Retrocopy | GALFGANANRKFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |