RetrogeneDB ID: | retro_cfam_1997 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 9:19562638..19563315(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000014466 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000016151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MALSDA-DVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK |
MALSDA.D.QKQIKHMMAFIEQEAN.KA.EIDAKAEEEFNIEKGRLVQTQRLKIMEY.EKKEKQIEQQKK | |
Retrocopy | MALSDA>DMQKQIKHMMAFIEQEANDKAKEIDAKAEEEFNIEKGRLVQTQRLKIMEYCEKKEKQIEQQKK |
Parental | IQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQ |
IQM.NLMNQAR.KVLRAR.DLITDLLNEAKQRLSK.VKDTTRYQVLLDGLVLQGLYQLL.PRMIVRCRKQ | |
Retrocopy | IQMFNLMNQARFKVLRARYDLITDLLNEAKQRLSKMVKDTTRYQVLLDGLVLQGLYQLLKPRMIVRCRKQ |
Parental | DFPLVKAAV-QKAIPMYKIATK-KDVDVQIDQESYLPEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQM |
DFPLVKAAV..K.....K...K.KDVD.QIDQE.YLPEEIAGGVEIYNGD.KIKVSN.LES.LDLIAQQM | |
Retrocopy | DFPLVKAAV<KKRFLCTKLSPK<KDVDEQIDQECYLPEEIAGGVEIYNGDCKIKVSNILESQLDLIAQQM |
Parental | MPEVRGALFGANANRKFLD |
MPEVR.ALFGANANRKFLD | |
Retrocopy | MPEVREALFGANANRKFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 164 .76 RPM |
SRP017611_brain | 0 .00 RPM | 146 .32 RPM |
SRP017611_kidney | 0 .07 RPM | 168 .79 RPM |
SRP017611_liver | 0 .00 RPM | 24 .94 RPM |