Parental gene:

ENSCJAG00000017277

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:182801160..182844089(-)


>ENSCJAG00000017277
ATGGCTCTCAGCGATGCTGACGTGCAAAAGCAGATTAAGCATATGATGGCTTTCATTGAACAAGAAGCCAATGAGAAAGC
AGAAGAAATAGATGCAAAGTCAGAAGTCTCCTTCTTGGCCAAGGGCAGTTCACTAAACAGTTACACCACTTTCATAGACG
TGGAATTGGTAGGCCTGGCGACTTCACCAGATAGCCAGGCACTGAGTCAGATGTCCAATTTGATGAATCAAGCAAGGCTC
AAAGTCCTCAGAGCAAGAGATGACCTTATCACAGACCTACTAAATGAAGCGAAACAGAGGCTCAGCAAGGTGGTAAAAGA
TACAACCAGGTACCAGGTGCTGCTGGATGGACTGGTTCTCCAGGGTTTGTACCAGTTGCTGGAGCCCCGAATGATTGTTC
GATGCAGGAAACAAGATTTCCCTCTGGTAAAGGCTGCAGTGCAAAAGGCAATCCCAATGTACAAAATCGCCACCAAAAAC
GATGTTGATGTCCAAATTGACCAGGAGTCCTACCTGCCTGAGGACATAGCTGGTGGAGTTGAGATCTATAATGGGGATCG
TAAAATAAAGGTTTCCAACACCCTGGAGAGCCGGCTGGACCTCATAGCCCAGCAGATGATGCCAGAAGTCCGGGGAGCCT
TGTTTGGGGCCAATGCCAACAGGAAGTTTTTGGACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 8 .28 RPM
SRP051959_skeletal_muscle 8 .23 RPM
SRP051959_lymph_node 7 .08 RPM
SRP051959_lung 6 .47 RPM
SRP051959_liver 7 .26 RPM
SRP051959_kidney 14 .13 RPM
SRP051959_heart 7 .05 RPM
SRP051959_colon 6 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017489 possible_ortholog 2 retrogenes
retro_amel_116, retro_amel_1502,
Bos taurus ENSBTAG00000014238 possible_ortholog 1 retrogene
retro_btau_244,
Canis familiaris ENSCAFG00000016151 possible_ortholog 7 retrogenes
retro_cfam_1050, retro_cfam_1260, retro_cfam_1354, retro_cfam_1379, retro_cfam_1446, retro_cfam_1997, retro_cfam_73,
Cavia porcellus ENSCPOG00000024559 possible_ortholog 3 retrogenes
retro_cpor_172, retro_cpor_580, retro_cpor_76,
Dasypus novemcinctus ENSDNOG00000014592 ortholog_one2one 3 retrogenes
retro_dnov_2037, retro_dnov_44, retro_dnov_688,
Equus caballus ENSECAG00000016487 possible_ortholog 2 retrogenes
retro_ecab_165, retro_ecab_84,
Echinops telfairi ENSETEG00000019283 ortholog_one2many 2 retrogenes
retro_etel_1384, retro_etel_6,
Felis catus ENSFCAG00000008081 possible_ortholog 4 retrogenes
retro_fcat_153, retro_fcat_602, retro_fcat_61, retro_fcat_654,
Homo sapiens ENSG00000131100 possible_ortholog 3 retrogenes
retro_hsap_1126, retro_hsap_145, retro_hsap_21,
Gorilla gorilla ENSGGOG00000015027 possible_ortholog 2 retrogenes
retro_ggor_105, retro_ggor_235,
Loxodonta africana ENSLAFG00000003802 ortholog_one2many 4 retrogenes
retro_lafr_1220, retro_lafr_123, retro_lafr_134, retro_lafr_742,
Microcebus murinus ENSMICG00000010643 possible_ortholog 6 retrogenes
retro_mmur_1214, retro_mmur_1234, retro_mmur_813, retro_mmur_886, retro_mmur_971, retro_mmur_978,
Myotis lucifugus ENSMLUG00000014876 possible_ortholog 2 retrogenes
retro_mluc_312, retro_mluc_57,
Macaca mulatta ENSMMUG00000021477 possible_ortholog 4 retrogenes
retro_mmul_1102, retro_mmul_139, retro_mmul_370, retro_mmul_873,
Monodelphis domestica ENSMODG00000018452 ortholog_many2many 4 retrogenes
retro_mdom_1456, retro_mdom_1853, retro_mdom_248, retro_mdom_489,
Mustela putorius furo ENSMPUG00000018109 possible_ortholog 2 retrogenes
retro_mputfur_23, retro_mputfur_4,
Mus musculus ENSMUSG00000019210 possible_ortholog 1 retrogene
retro_mmus_122,
Nomascus leucogenys ENSNLEG00000007839 possible_ortholog 1 retrogene
retro_nleu_18,
Oryctolagus cuniculus ENSOCUG00000006964 ortholog_one2one 1 retrogene
retro_ocun_88,
Otolemur garnettii ENSOGAG00000013886 possible_ortholog 5 retrogenes
retro_ogar_1255, retro_ogar_1401, retro_ogar_2930, retro_ogar_6, retro_ogar_839,
Ochotona princeps ENSOPRG00000004591 ortholog_one2one 2 retrogenes
retro_opri_184, retro_opri_539,
Procavia capensis ENSPCAG00000016094 ortholog_one2many 1 retrogene
retro_pcap_455,
Pongo abelii ENSPPYG00000011560 possible_ortholog 1 retrogene
retro_pabe_189,
Rattus norvegicus ENSRNOG00000011905 possible_ortholog 1 retrogene
retro_rnor_383,
Sarcophilus harrisii ENSSHAG00000008300 ortholog_one2many 2 retrogenes
retro_shar_501, retro_shar_780,
Sus scrofa ENSSSCG00000000767 possible_ortholog 3 retrogenes
retro_sscr_788, retro_sscr_789, retro_sscr_83,
Ictidomys tridecemlineatus ENSSTOG00000022031 possible_ortholog 3 retrogenes
retro_itri_579, retro_itri_630, retro_itri_64,
Tarsius syrichta ENSTSYG00000010679 possible_ortholog 5 retrogenes
retro_tsyr_1093, retro_tsyr_1812, retro_tsyr_23, retro_tsyr_532, retro_tsyr_797,
Tursiops truncatus ENSTTRG00000015931 possible_ortholog 1 retrogene
retro_ttru_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1160 75.59 54.67
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Download FASTA sequences of all ENSCJAG00000017277 retrocopies