RetrogeneDB ID: | retro_cfam_1354 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:64770326..64771004(+) | ||
Located in intron of: | ENSCAFG00000015345 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000015359 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000016151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
M.L..AD.Q.QIKHMMAFIEQEANEKAEE.D.KA.EE.NIEKGRLVQTQRLK.MEYYEKKE..IEQQKKI | |
Retrocopy | MVLNGADMQEQIKHMMAFIEQEANEKAEEVDVKADEELNIEKGRLVQTQRLKMMEYYEKKERWIEQQKKI |
Parental | QMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMI-VRCRKQ |
QMSNLMNQARLKVLRARDDLIT.L.N.AKQRLSKVVKDTTRY.VLLDGLVLQGL.QLLEPRMI..RCRKQ | |
Retrocopy | QMSNLMNQARLKVLRARDDLITGLPNKAKQRLSKVVKDTTRYHVLLDGLVLQGLCQLLEPRMI>IRCRKQ |
Parental | DFPLVKAAVQKAIPMYKIATKKDVDVQIDQESYLPEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMP |
DFPLVKAAVQK.IP.YKI.TKKD.DVQ.DQ..YLPEE.AGGVEIYNGDRKIKVSNTLES.LDL.AQQ.MP | |
Retrocopy | DFPLVKAAVQKVIPTYKISTKKDIDVQTDQGAYLPEETAGGVEIYNGDRKIKVSNTLESWLDLVAQQTMP |
Parental | EVRGALF-GANANRKFLD |
EV.GAL...ANAN.KFLD | |
Retrocopy | EVQGALL<DANANGKFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 164 .76 RPM |
SRP017611_brain | 0 .08 RPM | 146 .32 RPM |
SRP017611_kidney | 0 .07 RPM | 168 .79 RPM |
SRP017611_liver | 0 .00 RPM | 24 .94 RPM |