RetrogeneDB ID: | retro_cfam_1446 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 31:15576351..15576937(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000016151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.77 % |
Parental protein coverage: | 84.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EEFNIEKG-RLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARD-DLITDLLNEAKQRLS |
.EFNIEKG..LVQTQRLKIMEYYEKKEKQIEQQ.KIQMSNLMNQARLK..R......I.DL......... | |
Retrocopy | KEFNIEKG<SLVQTQRLKIMEYYEKKEKQIEQQRKIQMSNLMNQARLKSNRCQVLRAIDDLITDLLNEAK |
Parental | KVVKDTTR----YQVLLDG-LVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDVDVQID |
.......R....YQVLLD..LVLQGLYQ.LEP.MIV.CRKQDFPLVK.AVQKAI.MYKIATKKDVDVQID | |
Retrocopy | QRLRKVVRDTTRYQVLLDN<LVLQGLYQFLEPQMIVHCRKQDFPLVKTAVQKAILMYKIATKKDVDVQID |
Parental | QESYLPEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD |
QESYLPEEIAGGVEIYNGD.K.KV.NTLES.LDLIAQQMMPEVRGA.FGANANRK.LD | |
Retrocopy | QESYLPEEIAGGVEIYNGDHKTKVANTLESLLDLIAQQMMPEVRGA*FGANANRKLLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 164 .76 RPM |
SRP017611_brain | 0 .00 RPM | 146 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 168 .79 RPM |
SRP017611_liver | 0 .00 RPM | 24 .94 RPM |