RetrogeneDB ID: | retro_amel_1502 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193516.1:263112..263452(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSAMEG00000017489 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 56.3 % |
Parental protein coverage: | 51.77 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | KGRLVQTQ-RLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTT |
KG.LVQT..RL...EY.E....QI..QK.I.MS.L.NQA..KV..AR.DLITDL..EAKQ.L.KV.K..T | |
Retrocopy | KGSLVQTK<RLNVTEYHERRKMQIV*QKEI*MSSL-NQANVKVF*ARNDLITDL-REAKQMLNKVIKGMT |
Parental | RYQVLLDGLVLQGLYQLLEPRMIVRCR-KQDFPLVKAAVQKAIPMYKIA |
...V.L..LVL..LY.LL...M.V.CR...DF.LVK..VQK.IP..KIA | |
Retrocopy | GH*V-LEALVLKDLYPLL*LLMTVHCR<DRDFLLVKTEVQKMIPIDKIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |