RetrogeneDB ID: | retro_eeur_114 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_7227:24342..24860(+) | ||
Located in intron of: | ENSEEUG00000003631 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSEEUG00000000203 | ||
Aliases: | None | ||
Description: | ribosomal protein L7a [Source:HGNC Symbol;Acc:10364] |
Percent Identity: | 93.14 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVD |
TQLLKLAHKY.PETKQEKKQRLLARAEKKAAGKGDVPTKRPPVL.AGVNTVTTLVENKKAQLVV.AHDVD | |
Retrocopy | TQLLKLAHKYKPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVL*AGVNTVTTLVENKKAQLVVTAHDVD |
Parental | PIELVVFLPALCRKMG-VPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYD |
.IELVV.LPALCRKMG.VPYCIIKG..RLGRLVHRKTCTTVAFTQVN.EDKGALAKLVEA.RTNYNDRYD | |
Retrocopy | SIELVV-LPALCRKMG<VPYCIIKGEGRLGRLVHRKTCTTVAFTQVNLEDKGALAKLVEATRTNYNDRYD |
Parental | EIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
EI.RHWGGNVLGPKSVARIAKLEKAKAKEL.TKLG | |
Retrocopy | EIHRHWGGNVLGPKSVARIAKLEKAKAKELTTKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 97 .17 RPM |
SRP017611_kidney | 0 .38 RPM | 204 .23 RPM |
SRP017611_liver | 0 .00 RPM | 157 .40 RPM |