RetrogeneDB ID:

retro_nleu_2853

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397451.1:2204819..2205617(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL7A
Ensembl ID:ENSNLEG00000013068
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2853
ATGCCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGTCCCTGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGT
GGTGAATCCACTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCTGCT
TTGTGAAATGGCCCCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTATAAGCGGCTGAAAGTGCCTCCTGCGATT
AACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAA
GCAAGAGAAGAGGCAGAGACTGTTGGCCCGGGCCGAGAAGAAAGCTGCTGGCAAAGGGGACGCCCCCACAAAGAGACCAC
CTGTCCTTCGAGCAGGAGTTAACACCCTCACCACGTTGATGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGAC
GTGGATCCCATTGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGCTCCTTACTGCATTATCAAGGGGAA
GGCAAGACTGGGCCGTCTAGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACACAGGTGAACTCAGAAGACAAAGGCG
CTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACGACAGAAACGATGATATCCGCCGTCACTGGGGCGGCAAC
GGCCTGGGTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGT

ORF - retro_nleu_2853 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.24 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAIL
MPKGKKAKGKKVAP.PAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLT.FVKWPRYIRLQRQRAIL
RetrocopyMPKGKKAKGKKVAPVPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTCFVKWPRYIRLQRQRAIL
ParentalYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV
YKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEK.QRLLARAEKKAAGKGD.PTKRPPVLRAGV
RetrocopyYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKRQRLLARAEKKAAGKGDAPTKRPPVLRAGV
ParentalNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSE
NT.TTL.ENKKAQLVVIAHDVDPIELVVFLPALCRKMG.PYCIIKGKARLGRLVHRKTCTTVAFTQVNSE
RetrocopyNTLTTLMENKKAQLVVIAHDVDPIELVVFLPALCRKMGAPYCIIKGKARLGRLVHRKTCTTVAFTQVNSE
ParentalDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG
DKGALAKLVEAIRTNYNDR.D.IRRHWGGN.LGPKSVARIAKLEKAKAKELATKLG
RetrocopyDKGALAKLVEAIRTNYNDRNDDIRRHWGGNGLGPKSVARIAKLEKAKAKELATKLG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2853 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 30 parental genes, and 415 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001170829 retrocopies
Bos taurus ENSBTAG000000115595 retrocopies
Canis familiaris ENSCAFG0000001768036 retrocopies
Callithrix jacchus ENSCJAG000000148273 retrocopies
Cavia porcellus ENSCPOG000000013244 retrocopies
Dasypus novemcinctus ENSDNOG000000244248 retrocopies
Dipodomys ordii ENSDORG000000064713 retrocopies
Equus caballus ENSECAG000000085482 retrocopies
Erinaceus europaeus ENSEEUG000000002032 retrocopies
Felis catus ENSFCAG0000000582520 retrocopies
Homo sapiens ENSG0000014830321 retrocopies
Gorilla gorilla ENSGGOG0000001444248 retrocopies
Loxodonta africana ENSLAFG000000064362 retrocopies
Macropus eugenii ENSMEUG0000001455016 retrocopies
Myotis lucifugus ENSMLUG0000000466610 retrocopies
Macaca mulatta ENSMMUG000000223419 retrocopies
Monodelphis domestica ENSMODG000000127543 retrocopies
Mustela putorius furoENSMPUG0000001239813 retrocopies
Mus musculus ENSMUSG0000006264710 retrocopies
Nomascus leucogenys ENSNLEG00000013068 22 retrocopies
Otolemur garnettii ENSOGAG0000001402716 retrocopies
Ochotona princeps ENSOPRG000000057264 retrocopies
Pongo abelii ENSPPYG0000001973052 retrocopies
Pteropus vampyrus ENSPVAG0000001704511 retrocopies
Rattus norvegicus ENSRNOG0000004909710 retrocopies
Sarcophilus harrisii ENSSHAG000000043374 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000036713 retrocopies
Tupaia belangeri ENSTBEG0000000859526 retrocopies
Tarsius syrichta ENSTSYG0000000546720 retrocopies
Tursiops truncatus ENSTTRG000000076453 retrocopies



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