Parental gene:

RPL7A, ENSPPYG00000019730

Aliases:None
Description:ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Organism:Orangutan (Pongo abelii)
Coordinates:9:130286898..130290412(+)


>ENSPPYG00000019730
ATGCCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGT
GGTGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCT
TTGTGAAATGGCCCCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTATAAGCGGCTGAAAGTGCCTCCTGCGATT
AACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAA
GCAAGAGAAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAAGCTGCTGGCAAAGGGGACGTCCCCACGAAGAGACCAC
CTGTCCTTCGAGCAGGAGTTAACACCGTCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGAC
GTGGATCCCATCGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGGAA
GGCAAGACTGGGACGTCTAGTCCACAGGAAGACTTGTACCACTGTCGCCTTCACACAGGTGAACTCTGAAGACAAAGGCG
CTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACGACAGATATGATGAGATCCGCCGTCACTGGGGCGGCAAC
ATCCTGGGTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGTTA
A

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 169 .30 RPM
SRP007412_cerebellum 97 .28 RPM
SRP007412_heart 150 .31 RPM
SRP007412_kidney 335 .58 RPM
SRP007412_liver 292 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 possible_ortholog 29 retrogenes
retro_amel_1000, retro_amel_1058, retro_amel_1149, retro_amel_1159, retro_amel_1207, retro_amel_1220, retro_amel_1269, retro_amel_1314, retro_amel_1417, retro_amel_142, retro_amel_1429, retro_amel_1471, retro_amel_1499, retro_amel_1506, retro_amel_1641, retro_amel_1644, retro_amel_169, retro_amel_170, retro_amel_1812, retro_amel_1873, retro_amel_357, retro_amel_463, retro_amel_525, retro_amel_529, retro_amel_544, retro_amel_671, retro_amel_726, retro_amel_758, retro_amel_801,
Canis familiaris ENSCAFG00000017680 possible_ortholog 36 retrogenes
retro_cfam_1121, retro_cfam_1123, retro_cfam_1165, retro_cfam_1187, retro_cfam_1242, retro_cfam_1365, retro_cfam_1429, retro_cfam_1471, retro_cfam_1497, retro_cfam_1532, retro_cfam_1553, retro_cfam_1563, retro_cfam_1683, retro_cfam_1711, retro_cfam_1721, retro_cfam_1750, retro_cfam_1865, retro_cfam_1898, retro_cfam_2032, retro_cfam_2103, retro_cfam_2111, retro_cfam_2120, retro_cfam_2144, retro_cfam_311, retro_cfam_340, retro_cfam_380, retro_cfam_423, retro_cfam_476, retro_cfam_518, retro_cfam_605, retro_cfam_694, retro_cfam_723, retro_cfam_827, retro_cfam_853, retro_cfam_927, retro_cfam_935,
Callithrix jacchus ENSCJAG00000014827 possible_ortholog 3 retrogenes
retro_cjac_199, retro_cjac_343, retro_cjac_49,
Cavia porcellus ENSCPOG00000001324 possible_ortholog 4 retrogenes
retro_cpor_1296, retro_cpor_423, retro_cpor_828, retro_cpor_850,
Dasypus novemcinctus ENSDNOG00000024424 possible_ortholog 8 retrogenes
retro_dnov_1245, retro_dnov_1509, retro_dnov_169, retro_dnov_1861, retro_dnov_2538, retro_dnov_2591, retro_dnov_302, retro_dnov_825,
Dipodomys ordii ENSDORG00000006471 ortholog_one2many 3 retrogenes
retro_dord_198, retro_dord_218, retro_dord_516,
Equus caballus ENSECAG00000008548 possible_ortholog 2 retrogenes
retro_ecab_4, retro_ecab_402,
Erinaceus europaeus ENSEEUG00000000203 possible_ortholog 2 retrogenes
retro_eeur_114, retro_eeur_490,
Felis catus ENSFCAG00000005825 possible_ortholog 20 retrogenes
retro_fcat_1123, retro_fcat_1137, retro_fcat_1170, retro_fcat_1277, retro_fcat_1315, retro_fcat_1318, retro_fcat_1344, retro_fcat_1528, retro_fcat_1583, retro_fcat_1771, retro_fcat_1980, retro_fcat_214, retro_fcat_252, retro_fcat_385, retro_fcat_389, retro_fcat_468, retro_fcat_542, retro_fcat_628, retro_fcat_694, retro_fcat_943,
Gorilla gorilla ENSGGOG00000014442 ortholog_one2one 48 retrogenes
retro_ggor_1034, retro_ggor_1042, retro_ggor_1087, retro_ggor_1107, retro_ggor_1190, retro_ggor_1249, retro_ggor_1408, retro_ggor_1409, retro_ggor_1460, retro_ggor_1541, retro_ggor_1591, retro_ggor_172, retro_ggor_1724, retro_ggor_1881, retro_ggor_194, retro_ggor_2004, retro_ggor_2033, retro_ggor_2087, retro_ggor_2117, retro_ggor_2147, retro_ggor_2313, retro_ggor_2410, retro_ggor_2430, retro_ggor_2480, retro_ggor_2522, retro_ggor_2578, retro_ggor_2611, retro_ggor_2617, retro_ggor_2618, retro_ggor_2779, retro_ggor_2781, retro_ggor_2871, retro_ggor_2872, retro_ggor_288, retro_ggor_2960, retro_ggor_310, retro_ggor_333, retro_ggor_386, retro_ggor_539, retro_ggor_626, retro_ggor_636, retro_ggor_640, retro_ggor_658, retro_ggor_663, retro_ggor_815, retro_ggor_865, retro_ggor_904, retro_ggor_963,
Loxodonta africana ENSLAFG00000006436 possible_ortholog 2 retrogenes
retro_lafr_1059, retro_lafr_1132,
Macropus eugenii ENSMEUG00000014550 ortholog_one2many 16 retrogenes
retro_meug_1268, retro_meug_133, retro_meug_1362, retro_meug_1523, retro_meug_1581, retro_meug_1872, retro_meug_2011, retro_meug_2080, retro_meug_2101, retro_meug_2123, retro_meug_401, retro_meug_632, retro_meug_654, retro_meug_687, retro_meug_699, retro_meug_919,
Myotis lucifugus ENSMLUG00000004666 possible_ortholog 10 retrogenes
retro_mluc_1033, retro_mluc_1087, retro_mluc_1359, retro_mluc_1365, retro_mluc_1745, retro_mluc_1877, retro_mluc_2074, retro_mluc_541, retro_mluc_558, retro_mluc_670,
Macaca mulatta ENSMMUG00000022341 possible_ortholog 9 retrogenes
retro_mmul_113, retro_mmul_130, retro_mmul_204, retro_mmul_230, retro_mmul_252, retro_mmul_259, retro_mmul_309, retro_mmul_33, retro_mmul_4,
Monodelphis domestica ENSMODG00000012754 ortholog_one2many 3 retrogenes
retro_mdom_1347, retro_mdom_418, retro_mdom_586,
Mustela putorius furo ENSMPUG00000012398 possible_ortholog 13 retrogenes
retro_mputfur_1081, retro_mputfur_1210, retro_mputfur_1281, retro_mputfur_1344, retro_mputfur_1380, retro_mputfur_1611, retro_mputfur_1612, retro_mputfur_325, retro_mputfur_459, retro_mputfur_656, retro_mputfur_698, retro_mputfur_792, retro_mputfur_900,
Mus musculus ENSMUSG00000062647 ortholog_one2many 10 retrogenes
retro_mmus_120, retro_mmus_141, retro_mmus_165, retro_mmus_166, retro_mmus_214, retro_mmus_226, retro_mmus_267, retro_mmus_34, retro_mmus_43, retro_mmus_93,
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
retro_nleu_1051, retro_nleu_1056, retro_nleu_137, retro_nleu_1404, retro_nleu_1418, retro_nleu_1682, retro_nleu_1920, retro_nleu_2130, retro_nleu_2254, retro_nleu_2341, retro_nleu_2397, retro_nleu_2423, retro_nleu_2641, retro_nleu_267, retro_nleu_2822, retro_nleu_2853, retro_nleu_399, retro_nleu_432, retro_nleu_562, retro_nleu_780, retro_nleu_796, retro_nleu_82,
Otolemur garnettii ENSOGAG00000014027 possible_ortholog 16 retrogenes
retro_ogar_1014, retro_ogar_1172, retro_ogar_1638, retro_ogar_1735, retro_ogar_1815, retro_ogar_2774, retro_ogar_3012, retro_ogar_3097, retro_ogar_319, retro_ogar_404, retro_ogar_57, retro_ogar_685, retro_ogar_758, retro_ogar_850, retro_ogar_926, retro_ogar_994,
Ochotona princeps ENSOPRG00000005726 possible_ortholog 4 retrogenes
retro_opri_451, retro_opri_629, retro_opri_65, retro_opri_922,
Rattus norvegicus ENSRNOG00000049097 ortholog_one2many 10 retrogenes
retro_rnor_123, retro_rnor_15, retro_rnor_238, retro_rnor_303, retro_rnor_323, retro_rnor_346, retro_rnor_368, retro_rnor_398, retro_rnor_403, retro_rnor_86,
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2many 4 retrogenes
retro_shar_157, retro_shar_338, retro_shar_401, retro_shar_494,
Ictidomys tridecemlineatus ENSSTOG00000003671 ortholog_one2many 3 retrogenes
retro_itri_1034, retro_itri_53, retro_itri_920,
Tupaia belangeri ENSTBEG00000008595 ortholog_one2one 26 retrogenes
retro_tbel_1102, retro_tbel_112, retro_tbel_1314, retro_tbel_1420, retro_tbel_1484, retro_tbel_174, retro_tbel_1770, retro_tbel_1892, retro_tbel_1916, retro_tbel_2015, retro_tbel_2063, retro_tbel_2630, retro_tbel_2748, retro_tbel_2896, retro_tbel_3005, retro_tbel_3017, retro_tbel_3445, retro_tbel_4295, retro_tbel_4298, retro_tbel_4737, retro_tbel_542, retro_tbel_686, retro_tbel_861, retro_tbel_949, retro_tbel_950, retro_tbel_960,
Tarsius syrichta ENSTSYG00000005467 possible_ortholog 20 retrogenes
retro_tsyr_1009, retro_tsyr_1012, retro_tsyr_1166, retro_tsyr_1168, retro_tsyr_1280, retro_tsyr_1346, retro_tsyr_158, retro_tsyr_1798, retro_tsyr_182, retro_tsyr_1824, retro_tsyr_1939, retro_tsyr_2039, retro_tsyr_214, retro_tsyr_251, retro_tsyr_484, retro_tsyr_63, retro_tsyr_696, retro_tsyr_880, retro_tsyr_907, retro_tsyr_911,
Tursiops truncatus ENSTTRG00000007645 ortholog_one2many 3 retrogenes
retro_ttru_1334, retro_ttru_1681, retro_ttru_1824,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_267 70.41 72.93
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2. retro_pabe_271 92.51 100.00
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3. retro_pabe_293 72.16 65.41
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4. retro_pabe_330 82.49 79.70
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5. retro_pabe_379 91.35 100.00
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6. retro_pabe_519 84.27 100.00
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7. retro_pabe_540 87.01 66.17
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8. retro_pabe_549 66.81 88.35
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9. retro_pabe_581 91.16 80.45
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10. retro_pabe_645 91.39 100.00
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11. retro_pabe_664 85.19 89.47
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12. retro_pabe_682 74.05 58.65
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13. retro_pabe_715 70.06 65.41
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14. retro_pabe_725 72.86 76.69
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15. retro_pabe_755 65.54 100.00
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16. retro_pabe_864 81.36 65.04
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17. retro_pabe_914 80.00 50.38
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18. retro_pabe_963 90.26 100.00
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19. retro_pabe_1022 59.87 55.64
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20. retro_pabe_1104 80.18 81.58
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21. retro_pabe_1112 79.01 60.90
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22. retro_pabe_1160 84.71 58.65
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23. retro_pabe_1189 83.90 100.00
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24. retro_pabe_1305 96.24 100.00
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25. retro_pabe_1368 89.47 100.00
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26. retro_pabe_1652 65.15 97.74
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27. retro_pabe_1662 84.91 79.32
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28. retro_pabe_1871 91.79 100.00
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29. retro_pabe_2059 70.11 100.00
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30. retro_pabe_2264 51.66 55.64
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31. retro_pabe_2286 93.63 100.00
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32. retro_pabe_2305 67.74 57.89
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33. retro_pabe_2394 74.32 54.89
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34. retro_pabe_2501 57.38 87.97
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35. retro_pabe_2522 84.07 100.00
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36. retro_pabe_2534 88.48 71.80
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37. retro_pabe_2553 96.62 100.00
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38. retro_pabe_2588 90.95 74.81
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39. retro_pabe_2654 80.37 60.53
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40. retro_pabe_2896 65.58 56.77
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41. retro_pabe_2960 85.02 100.00
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42. retro_pabe_3009 77.04 95.11
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43. retro_pabe_3033 84.70 100.00
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44. retro_pabe_3079 85.39 100.00
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45. retro_pabe_3118 74.84 57.89
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46. retro_pabe_3171 79.70 99.25
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47. retro_pabe_3231 82.51 68.42
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48. retro_pabe_3444 89.16 93.61
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49. retro_pabe_3467 80.33 89.10
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50. retro_pabe_3469 83.52 100.00
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51. retro_pabe_3500 77.14 52.26
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52. retro_pabe_3700 67.89 80.83
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Download FASTA sequences of all ENSPPYG00000019730 retrocopies