Parental gene:

RGD1560194, ENSRNOG00000049097

Aliases:None
Description:60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:P62425]
Organism:Rat (Rattus norvegicus)
Coordinates:3:10222429..10224853(+)


>ENSRNOG00000049097
CCCAAAGGAAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCCGCCGTGGTCAAGAAACAAGAGGCCAAAAAGGTGGT
CAATCCTTTGTTTGAGAAAAGGCCTAAGAACTTCGGCATTGGGCAGGACATCCAGCCCAAAAGAGATCTCACGCGCTTCG
TCAAATGGCCCCGCTACATCAGGCTGCAGCGGCAAAGAGCCATCCTCTATAAGCGGCTCAAAGTACCTCCTGCCATCAAC
CAGTTCACCCAGGCCCTGGACAGGCAAACAGCGACTCAGCTGCTTAAGCTTGCCCACAAGTACAGGCCAGAGACAAAGCA
GGAGAAGAAGCAGAGGCTGCTGGCCCGCGCTGAGAAGAAAGCTGCTGGCAAAGGGGACGTCCCAACTAAGAGACCACCTG
TCCTCCGAGCAGGGGTCAATACAGTCACCACTTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATTGCCCATGATGTA
GACCCCATTGAGCTGGTGGTTTTCCTGCCTGCCCTGTGTCGAAAGATGGGGGTGCCCTACTGCATCATCAAGGGAAAGGC
CAGGCTGGGGCGCCTGGTCCACAGGAAGACATGCACCACTGTTGCCTTCACACAGGTGAACTCGGAAGACAAGGGTGCTC
TGGCTAAGCTGGTGGAAGCTATTAGGACCAATTATAATGACAGATATGACGAGATCCGCCGCCACTGGGGAGGCAACGTC
CTGGGTCCTAAGTCTGTGGCTCGCATTGCCAAGCTGGAAAAGGCAAAGGCTAAAGAACTCGCCACTAAGCTGGGTTAA

Library Parental gene expression (RPM)
SRP017611_liver 0 .00 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_brain 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 possible_ortholog 29 retrogenes
Bos taurus ENSBTAG00000011559 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000017680 possible_ortholog 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 possible_ortholog 3 retrogenes
Cavia porcellus ENSCPOG00000001324 possible_ortholog 4 retrogenes
Dasypus novemcinctus ENSDNOG00000024424 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2many 3 retrogenes
Equus caballus ENSECAG00000008548 possible_ortholog 2 retrogenes
Erinaceus europaeus ENSEEUG00000000203 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000005825 possible_ortholog 20 retrogenes
Homo sapiens ENSG00000148303 possible_ortholog 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 ortholog_many2many 48 retrogenes
Loxodonta africana ENSLAFG00000006436 possible_ortholog 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2many 16 retrogenes
Myotis lucifugus ENSMLUG00000004666 possible_ortholog 10 retrogenes
Macaca mulatta ENSMMUG00000022341 possible_ortholog 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2many 3 retrogenes
Mustela putorius furo ENSMPUG00000012398 possible_ortholog 13 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 possible_ortholog 16 retrogenes
Ochotona princeps ENSOPRG00000005726 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000019730 ortholog_one2many 52 retrogenes
Pteropus vampyrus ENSPVAG00000017045 possible_ortholog 11 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2many 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 ortholog_one2many 3 retrogenes
Tupaia belangeri ENSTBEG00000008595 ortholog_one2many 26 retrogenes
Tarsius syrichta ENSTSYG00000005467 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_15 92.83 100.00
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2. retro_rnor_86 94.70 99.62
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3. retro_rnor_123 98.11 99.62
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4. retro_rnor_238 95.47 100.00
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5. retro_rnor_303 99.62 100.00
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6. retro_rnor_323 95.47 100.00
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7. retro_rnor_346 93.96 100.00
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8. retro_rnor_368 97.36 100.00
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9. retro_rnor_398 90.59 76.23
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10. retro_rnor_403 96.60 100.00
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Download FASTA sequences of all ENSRNOG00000049097 retrocopies