Parental gene:

RPL7A, ENSMODG00000012754

Aliases:None
Description:ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:460617518..460620171(+)


>ENSMODG00000012754
CTTTTTTTAAAGCCCAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCTGCCGTTGTAAAAAAGCAGGAGGC
CAAGAAAGTGGTCAATCCTTTGTTTGAAAAGCGGCCCAAGAATTTTGGCATTGGTCAGGATATCCAGCCCAAAAGGGACC
TCACCCGTTTTGTCAAATGGCCTCGATACATTAGACTGCAGCGTCAAAGGTCTATCCTTTATAAACGATTGAAAGTGCCA
CCAGCAATCAACCAGTTTACCCAGGCTTTGGACCGTCAGACAGCTACTCAGCTGCTTAAACTGGCTCACAAGTACAGACC
TGAGACAAAGCAAGAAAAGAAGCAAAGGTTGCTGGCTCGGGCTGAACAAAAAGCTGCAGGCAAGGGGGATGCTCCCACTA
AGAGACCACCTGTCCTCAGAGCAGGTGTTAACACTGTTACTACCCTGGTAGAAAACAAGAAAGCACAGTTGGTAGTGATT
GCACATGATGTGGACCCCATTGAGCTTGTGGTTTTCCTACCTGCCTTGTGCCGAAAAATGGGAGTTCCTTACTGTATTAT
CAAAGGTAAAGCCAGACTGGGTCGATTGGTTCACAGAAAGACTTGCACAAGCATTGCCTTCACACAAGTTAACCCGGAAG
ATAAGGGAGCCCTGGCTAAGCTGGTAGAGGCCATCAAAACTAATTACAATGACAGATATGATGAGATCCGTCGCCACTGG
GGTGGCAATGTTCTGGGTCCAAAATCAGTGGCTCGTATTGCCAAGCTGGAAAAGGCAAAAGCTAAGGAACTTGCAACTAA
ATTGGGTTAA

Library Parental gene expression (RPM)
SRP007412_brain 937 .36 RPM
SRP007412_cerebellum 906 .89 RPM
SRP007412_heart 1530 .42 RPM
SRP007412_kidney 3644 .99 RPM
SRP007412_liver 3019 .93 RPM
SRP007412_testis 748 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 ortholog_one2many 29 retrogenes
Bos taurus ENSBTAG00000011559 ortholog_one2one 5 retrogenes
Canis familiaris ENSCAFG00000017680 ortholog_one2many 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 ortholog_one2many 3 retrogenes
Cavia porcellus ENSCPOG00000001324 ortholog_one2one 4 retrogenes
Dasypus novemcinctus ENSDNOG00000024424 ortholog_one2one 8 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2one 3 retrogenes
Equus caballus ENSECAG00000008548 ortholog_one2many 2 retrogenes
Erinaceus europaeus ENSEEUG00000000203 ortholog_one2many 2 retrogenes
Felis catus ENSFCAG00000005825 ortholog_one2many 20 retrogenes
Homo sapiens ENSG00000148303 ortholog_one2one 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 ortholog_one2many 48 retrogenes
Loxodonta africana ENSLAFG00000006436 ortholog_one2many 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2one 16 retrogenes
Myotis lucifugus ENSMLUG00000004666 ortholog_one2one 10 retrogenes
Macaca mulatta ENSMMUG00000022341 ortholog_one2many 9 retrogenes
Mustela putorius furo ENSMPUG00000012398 ortholog_one2many 13 retrogenes
Mus musculus ENSMUSG00000062647 ortholog_one2many 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 ortholog_one2many 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 ortholog_one2many 16 retrogenes
Ochotona princeps ENSOPRG00000005726 ortholog_one2one 4 retrogenes
Pongo abelii ENSPPYG00000019730 ortholog_one2many 52 retrogenes
Pteropus vampyrus ENSPVAG00000017045 ortholog_one2one 11 retrogenes
Rattus norvegicus ENSRNOG00000049097 ortholog_one2many 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2one 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 ortholog_one2many 3 retrogenes
Tupaia belangeri ENSTBEG00000008595 ortholog_one2many 26 retrogenes
Tarsius syrichta ENSTSYG00000005467 ortholog_one2one 20 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_418 85.98 78.81
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2. retro_mdom_586 88.56 87.73
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3. retro_mdom_1347 67.34 72.86
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Download FASTA sequences of all ENSMODG00000012754 retrocopies