RetrogeneDB ID:

retro_ggor_3057

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:X:118501112..118502593(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HSPA8
Ensembl ID:ENSGGOG00000008381
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_3057
ACTCAGTGTCAGGCTAACAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATTATTAATGAGCCAACTGCTGC
TGCTATTGCTTACAGCTTAGACAAAAAGGTTAGAGCAGAAAGAAACATGCTGATCTTTGACCTGGGAAGTGGCACTTTTG
ATGTGTCAGTCCTCACTATTGAGGATGGAATCTTTGAGGCCAAATCTACAGCCAGAGACACCCACTTGGTGGAGAAGATT
TTGACAACCGAATGGTCAACCATTTTATTGCTGAGTACAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAGAGAGCT
GTAAGACGCCTCCGTACTGCTTGTGAACATGCTAAGAGTACTGTCTCTTCCAGCACCCATGCCAGTACTGAGATCGATTC
TCTCTCTGAAGGAATCGACATCTATACCTCCAATACCTGTGCCTCATTTGAAGAATTGAATGCTGACCTGTTCCTTAGCA
CCCTGGACCCGGTAGAGAAAGCCCTTCGAGACGCCAAACTAGACAAGTCACAGATTCGTGATATTGCCCTGGTTGGTGGT
TCTACTCATATCCCCAAGATTCAGAAGCTTCTCCAAGACTTCTTCCATGGAAAATAACTGAATAAGAGCATCAACCCTGA
TGAAGCTGTTGCTTATGGTGCAGCTGTCCAAGCAGCCATCCTGTCTGGAGACAAGTCTGAAAATGTTCAAGATTTGCTGC
TCTTGGATGTCACTCCTCTTTCCTTTGGTATTGAAACTGCTGGTAGAGTCATAACTGACCTCATCAAACATAATACTACC
ATTCCTACCAAGCAGACACAGACCTTCACTACCTATTCTGACAACCAGCCTGGTGTGCTTATTCAGCTTTATGAAGGGGA
GCATACCATGACCAAGGATGACAACCTGCTTGACAAGTTTGAACTCACAGGCATACCTCCTGCACCCCGAGGTGTTCCTC
AGATTGAAGTCACTTTTGACACTAATGCCAATGGCATCCTCAATGTTTCTGCTGTGGACAAGAGTACAAGAAAAAAGAAC
AAGATTACTATCACTAATGACAAGGGCCATTTGAGCAAGGAAGACATTGAATATATGGTCCAGGAAGCTGAGAAGTACAA
AGCTGAAGATCAGAAGCAGAAGGACAAAGTGTCATCCAAGAACTCACTTGATTCCTGTGAATTCAACATAGAAGCAACTC
TCAAAGATGAGAAACTTCCAGGCAAGATTAACGATGAGGACAAACACAAGATTCTGCACAAGTATAATGAAATTATCAAC
TGGCTCCATAAGAATCAGACTGCCGAGAAGGAAGAATTTGAACATCAGCAGAAAGAGCTGAAGAAAGTCTGCAACCCCAT
CATTACCAAGCTGTACCAGAGTGCAGGAGGCATGCCAGGAGGAATGCCTGGGGGATTCCCTGGTGGTGGAGCTCCTCCCT
CTGGTGGTGCTTCCTCAGGGCCCACCATTGAAGAGGTTGAT

ORF - retro_ggor_3057 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.05 %
Parental protein coverage: 79.81 %
Number of stop codons detected: 1
Number of frameshifts detected: 1


Retrocopy - Parental Gene Alignment:

ParentalSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKST
.Q.QA.KDAGTIAGLNVLRIINEPTAAAIAY.LDKKV.AERN.LIFDLG.GTFDVS.LTIEDGIFE.KST
RetrocopyTQCQANKDAGTIAGLNVLRIINEPTAAAIAYSLDKKVRAERNMLIFDLGSGTFDVSVLTIEDGIFEAKST
ParentalAGDTHL-GGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI
A.DTHL.GGEDFDNRMVNHFIAE.KRKHKKDISENKRAVRRLRTACE.AK.T.SSST.AS.EIDSL.EGI
RetrocopyARDTHL<GGEDFDNRMVNHFIAEYKRKHKKDISENKRAVRRLRTACEHAKSTVSSSTHASTEIDSLSEGI
ParentalDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNK
D.YTS.T.A.FEELNADLF..TLDPVEKALRDAKLDKSQI.DI.LVGGST.IPKIQKLLQDFF.GK.LNK
RetrocopyDIYTSNTCASFEELNADLFLSTLDPVEKALRDAKLDKSQIRDIALVGGSTHIPKIQKLLQDFFHGK*LNK
ParentalSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTY
SINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLS.GIETAG.V.T.LIK.NTTIPTKQTQTFTTY
RetrocopySINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSFGIETAGRVITDLIKHNTTIPTKQTQTFTTY
ParentalSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKI
SDNQPGVLIQ.YEGE..MTKD.NLL.KFELTGIPPAPRGVPQIEVTFD..ANGILNVSAVDKST.K.NKI
RetrocopySDNQPGVLIQLYEGEHTMTKDDNLLDKFELTGIPPAPRGVPQIEVTFDTNANGILNVSAVDKSTRKKNKI
ParentalTITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKIL
TITNDKG.LSKEDIE.MVQEAEKYKAED.KQ.DKVSSKNSL.S..FN..AT..DEKL.GKINDEDK.KIL
RetrocopyTITNDKGHLSKEDIEYMVQEAEKYKAEDQKQKDKVSSKNSLDSCEFNIEATLKDEKLPGKINDEDKHKIL
ParentalDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPT
.K.NEIINWL.KNQTAEKEEFEHQQKEL.KVCNPIITKLYQSAGGMPGGMPGG..............GPT
RetrocopyHKYNEIINWLHKNQTAEKEEFEHQQKELKKVCNPIITKLYQSAGGMPGGMPGGXXXXXXXXXXXXXXGPT
ParentalIEEVD
IEEVD
RetrocopyIEEVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .19 RPM 984 .21 RPM
SRP007412_cerebellum 0 .08 RPM 402 .18 RPM
SRP007412_heart 0 .00 RPM 225 .64 RPM
SRP007412_kidney 0 .16 RPM 1085 .60 RPM
SRP007412_liver 0 .03 RPM 366 .65 RPM
SRP007412_testis 0 .00 RPM 549 .80 RPM

ChIP-Seq - click to see more details

Gorilla gorilla was not studied using ChIP-Seq data.

EST - click to see more details

Gorilla gorilla was not studied using EST data.

TSS - click to see more details

Gorilla gorilla was not studied using FANTOM5 data.

Lab - click to see more details

retro_ggor_3057 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_3057 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_4896
Pan troglodytes retro_ptro_3264
Pongo abelii retro_pabe_3808
Macaca mulatta retro_mmul_2632
Parental genes homology:
Parental genes homology involve 30 parental genes, and 89 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000048842 retrocopies
retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca ENSAMEG000000084251 retrocopy
retro_amel_126,
Anas platyrhynchos ENSAPLG000000106671 retrocopy
retro_apla_6,
Bos taurus ENSBTAG000000131621 retrocopy
retro_btau_354,
Canis familiaris ENSCAFG000000116663 retrocopies
retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis ENSCING000000096651 retrocopy
retro_cint_12,
Callithrix jacchus ENSCJAG000000076485 retrocopies
retro_cjac_2388, retro_cjac_3306, retro_cjac_3898, retro_cjac_4057, retro_cjac_721,
Cavia porcellus ENSCPOG000000041693 retrocopies
retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi ENSCSAVG000000085881 retrocopy
retro_csav_3,
Echinops telfairi ENSETEG000000109961 retrocopy
retro_etel_43,
Ficedula albicollis ENSFALG000000058121 retrocopy
retro_falb_18,
Felis catus ENSFCAG000000011326 retrocopies
retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Gallus gallus ENSGALG000000065121 retrocopy
retro_ggal_8,
Gorilla gorilla ENSGGOG00000008381 8 retrocopies
retro_ggor_1053, retro_ggor_1810, retro_ggor_1888, retro_ggor_1918, retro_ggor_2501, retro_ggor_3054, retro_ggor_3057 , retro_ggor_360,
Gorilla gorilla ENSGGOG000000141541 retrocopy
retro_ggor_1747,
Gorilla gorilla ENSGGOG000000268791 retrocopy
retro_ggor_2082,
Loxodonta africana ENSLAFG000000303124 retrocopies
retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo ENSMGAG000000019291 retrocopy
retro_mgal_9,
Myotis lucifugus ENSMLUG000000048343 retrocopies
retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Monodelphis domestica ENSMODG000000129582 retrocopies
retro_mdom_127, retro_mdom_99,
Mustela putorius furoENSMPUG000000058109 retrocopies
retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Mus musculus ENSMUSG000000156568 retrocopies
retro_mmus_2244, retro_mmus_2584, retro_mmus_26, retro_mmus_2621, retro_mmus_2840, retro_mmus_316, retro_mmus_351, retro_mmus_620,
Oryctolagus cuniculus ENSOCUG000000155334 retrocopies
retro_ocun_1308, retro_ocun_53, retro_ocun_584, retro_ocun_753,
Oreochromis niloticus ENSONIG000000047591 retrocopy
retro_onil_2,
Pongo abelii ENSPPYG000000039879 retrocopies
retro_pabe_183, retro_pabe_2193, retro_pabe_2254, retro_pabe_2260, retro_pabe_2261, retro_pabe_3153, retro_pabe_355, retro_pabe_3804, retro_pabe_3808,
Pelodiscus sinensis ENSPSIG000000124502 retrocopies
retro_psin_17, retro_psin_5,
Taeniopygia guttata ENSTGUG000000004911 retrocopy
retro_tgut_7,
Takifugu rubripes ENSTRUG000000052651 retrocopy
retro_trub_30,
Tursiops truncatus ENSTTRG000000111396 retrocopies
retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus ENSXMAG000000016021 retrocopy
retro_xmac_20,


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