RetrogeneDB ID: | retro_pabe_355 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:1800294..1801623(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DKFZP459D1928 | ||
Ensembl ID: | ENSPPYG00000003987 | ||
Aliases: | HSPA8, HSC70 | ||
Description: | heat shock cognate 71 kDa protein [Source:RefSeq peptide;Acc:NP_001125783] |
Percent Identity: | 85.84 % |
Parental protein coverage: | 68.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF-D |
MSKG.AV.ID.GTTYSCVGVF.HGKVEIIANDQGNRTTPSYVAFTD.E.LIGDA.KNQVA.NPTNTVF.D | |
Retrocopy | MSKGTAVDIDIGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFTDIE*LIGDATKNQVAVNPTNTVF>D |
Parental | AKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTV |
AK.LIG.RFDDAVVQ.DMK.WPF.V.NDAG.PKVQVEYKGETKSFYPEEV.S.VLTKMKEIAEAYLG.TV | |
Retrocopy | AKHLIGHRFDDAVVQPDMKYWPFLVMNDAGGPKVQVEYKGETKSFYPEEVPSVVLTKMKEIAEAYLGDTV |
Parental | TNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSI |
T.AVVTVPAYFND.Q.QATKDA.TIAGLNVLRII.EPTAAAIAY.LDKKVGAE.NVLIFDL.GGTFDVS. | |
Retrocopy | THAVVTVPAYFNDPQHQATKDARTIAGLNVLRIISEPTAAAIAYSLDKKVGAESNVLIFDLRGGTFDVSV |
Parental | LTIEDGIFEVKSTAGDTHLGGEDFDNRM-VNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST |
.TIEDGIFEVKSTAGDT.LGGEDFDNRM.VNHFIAEFK.KHKKDISENKRAVR.L.TACE.AK.TL.SS. | |
Retrocopy | FTIEDGIFEVKSTAGDTRLGGEDFDNRM<VNHFIAEFKSKHKKDISENKRAVRCLHTACEHAKHTLFSSI |
Parental | QASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQK |
QASI.IDSLYEGI.FY.S...ARFEELNADLF..TLDP.EKAL.DAKLDKSQIHDIVL.GGST.IPKIQK | |
Retrocopy | QASIGIDSLYEGINFYMSSAHARFEELNADLFHSTLDPIEKALQDAKLDKSQIHDIVLFGGSTHIPKIQK |
Parental | LLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT |
LLQDF.NGKE.NKSINPDEA.AYGAAVQAAILSGDKSE.VQDLLLLDV.PLSLGIETAGGV.TV.IKRN. | |
Retrocopy | LLQDFINGKEPNKSINPDEALAYGAAVQAAILSGDKSEIVQDLLLLDVSPLSLGIETAGGVITVFIKRNP |
Parental | TIPTKQTQTFTTYSDNQPGVLIQVY |
TIPTK.TQTFTTYS.NQPGVLI... | |
Retrocopy | TIPTKKTQTFTTYSGNQPGVLIHTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 425 .19 RPM |
SRP007412_cerebellum | 0 .12 RPM | 531 .03 RPM |
SRP007412_heart | 0 .00 RPM | 192 .27 RPM |
SRP007412_kidney | 0 .00 RPM | 310 .15 RPM |
SRP007412_liver | 0 .00 RPM | 196 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_340 |
Pan troglodytes | retro_ptro_272 |
Gorilla gorilla | retro_ggor_360 |
Macaca mulatta | retro_mmul_580 |