RetrogeneDB ID: | retro_ggor_953 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:66894896..66895232(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D3 | ||
Ensembl ID: | ENSGGOG00000010832 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.13 % |
Parental protein coverage: | 75.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VGDDMFHWQATIMGPNDSPYQGGVFFLTVHFPTDYPFKPPKVAFTTRIYHPNINSNGSIFLDILRSQWSP |
VGDDMFHWQ.T.M..N.SP......FL...F.T.Y.FKPP.V.F..RIYH.NI.SNG.I....L.SQW.. | |
Retrocopy | VGDDMFHWQVTLMKINESPFKIVYSFLAINFFTNYLFKPPEVEFKVRIYHLNI-SNGTIGCGTLKSQWLL |
Parental | ALTISKVLLSICSL-LCDPNPDD-PLVPEIARIYKTDRDKYNRIS |
ALTISK.LLS.CSL..C..N.DD.P..P.I..IYKTD..K.NRIS | |
Retrocopy | ALTISKGLLSVCSL<ACTTNTDD>PPMPVIVQIYKTDKNKNNRIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .71 RPM |
SRP007412_heart | 0 .00 RPM | 22 .55 RPM |
SRP007412_kidney | 0 .00 RPM | 119 .07 RPM |
SRP007412_liver | 0 .00 RPM | 98 .71 RPM |
SRP007412_testis | 0 .00 RPM | 106 .91 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1016 |